cyanobase » Prochlorococcus sp. scB243_495P20

Prochlorococcus sp. scB243_495P20

Summary

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Data source name GCA_000634875.1
Full name Prochlorococcus sp. scB243_495P20 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMB01000141 162,613 0
JFMB01000225 122,018 0
JFMB01000103 65,319 0
JFMB01000014 57,849 0
JFMB01000215 57,064 0
JFMB01000167 52,759 0
JFMB01000213 48,596 0
JFMB01000165 42,053 0
JFMB01000170 32,232 0
JFMB01000029 29,608 0
JFMB01000028 25,976 0
JFMB01000131 17,120 0
JFMB01000114 16,095 0
JFMB01000006 14,702 0
JFMB01000130 11,060 0
JFMB01000015 10,973 0
JFMB01000142 10,473 0
JFMB01000249 8,905 0
JFMB01000250 8,442 0
JFMB01000025 6,871 0
JFMB01000030 5,728 0
JFMB01000007 5,667 0
JFMB01000003 5,653 0
JFMB01000166 5,363 0
JFMB01000027 5,228 0
JFMB01000143 4,874 0
JFMB01000171 4,561 0
JFMB01000005 4,547 0
JFMB01000021 4,508 0
JFMB01000009 4,067 0
JFMB01000254 3,884 0
JFMB01000214 3,870 0
JFMB01000018 3,543 0
JFMB01000144 3,025 0
JFMB01000168 2,939 0
JFMB01000104 2,854 0
JFMB01000002 2,417 0
JFMB01000004 2,031 0
JFMB01000112 1,955 0
JFMB01000102 1,939 0
JFMB01000117 1,799 0
JFMB01000001 1,795 0
JFMB01000115 1,753 0
JFMB01000110 1,726 0
JFMB01000119 1,692 0
JFMB01000192 1,642 0
JFMB01000017 1,547 0
JFMB01000234 1,459 0
JFMB01000193 1,409 0
JFMB01000096 1,388 0
JFMB01000212 1,369 0
JFMB01000066 1,255 0
JFMB01000241 1,168 0
JFMB01000247 1,148 0
JFMB01000164 1,134 0
JFMB01000191 1,131 0
JFMB01000026 1,108 0
JFMB01000154 1,088 0
JFMB01000180 1,050 0
JFMB01000065 1,004 0
JFMB01000248 995 0
JFMB01000229 985 0
JFMB01000245 983 0
JFMB01000118 942 0
JFMB01000190 901 0
JFMB01000232 874 0
JFMB01000116 830 0
JFMB01000226 830 0
JFMB01000097 823 0
JFMB01000252 821 0
JFMB01000051 815 0
JFMB01000113 769 0
JFMB01000211 748 0
JFMB01000207 723 0
JFMB01000145 716 0
JFMB01000050 681 0
JFMB01000129 667 0
JFMB01000161 660 0
JFMB01000230 650 0
JFMB01000162 648 0
JFMB01000136 643 0
JFMB01000246 643 0
JFMB01000179 632 0
JFMB01000049 624 0
JFMB01000084 619 0
JFMB01000149 612 0
JFMB01000150 609 0
JFMB01000072 602 0
JFMB01000091 600 0
JFMB01000155 594 0
JFMB01000100 581 0
JFMB01000251 569 0
JFMB01000132 554 0
JFMB01000052 546 0
JFMB01000218 535 0
JFMB01000178 532 0
JFMB01000076 532 0
JFMB01000216 531 0
JFMB01000239 526 0
JFMB01000068 508 0
JFMB01000203 502 0
JFMB01000121 500 0
JFMB01000053 496 0
JFMB01000157 490 0
JFMB01000137 482 0
JFMB01000186 478 0
JFMB01000160 476 0
JFMB01000152 473 0
JFMB01000126 471 0
JFMB01000012 455 0
JFMB01000209 453 0
JFMB01000253 448 0
JFMB01000204 440 0
JFMB01000146 437 0
JFMB01000194 436 0
JFMB01000133 432 0
JFMB01000074 430 0
JFMB01000222 430 0
JFMB01000176 427 0
JFMB01000153 424 0
JFMB01000039 414 0
JFMB01000208 404 0
JFMB01000177 401 0
JFMB01000058 398 0
JFMB01000078 398 0
JFMB01000020 389 0
JFMB01000010 387 0
JFMB01000095 386 0
JFMB01000023 384 0
JFMB01000220 379 0
JFMB01000045 376 0
JFMB01000057 374 0
JFMB01000090 374 0
JFMB01000200 374 0
JFMB01000169 370 0
JFMB01000073 369 0
JFMB01000043 369 0
JFMB01000042 369 0
JFMB01000008 366 0
JFMB01000111 365 0
JFMB01000064 365 0
JFMB01000138 361 0
JFMB01000106 358 0
JFMB01000231 356 0
JFMB01000099 353 0
JFMB01000262 353 0
JFMB01000024 352 0
JFMB01000089 351 0
JFMB01000016 350 0
JFMB01000019 350 0
JFMB01000101 350 0
JFMB01000081 345 0
JFMB01000059 341 0
JFMB01000120 340 0
JFMB01000195 335 0
JFMB01000123 334 0
JFMB01000105 327 0
JFMB01000033 326 0
JFMB01000128 323 0
JFMB01000109 323 0
JFMB01000056 322 0
JFMB01000151 321 0
JFMB01000139 317 0
JFMB01000210 316 0
JFMB01000174 313 0
JFMB01000240 313 0
JFMB01000265 313 0
JFMB01000237 310 0
JFMB01000158 310 0
JFMB01000079 308 0
JFMB01000077 306 0
JFMB01000087 306 0
JFMB01000107 302 0
JFMB01000032 302 0
JFMB01000236 301 0
JFMB01000041 300 0
JFMB01000124 295 0
JFMB01000198 293 0
JFMB01000228 293 0
JFMB01000244 293 0
JFMB01000094 290 0
JFMB01000181 289 0
JFMB01000083 288 0
JFMB01000040 288 0
JFMB01000063 288 0
JFMB01000054 285 0
JFMB01000080 284 0
JFMB01000098 282 0
JFMB01000036 279 0
JFMB01000147 278 0
JFMB01000127 277 0
JFMB01000034 276 0
JFMB01000031 273 0
JFMB01000202 273 0
JFMB01000172 269 0
JFMB01000148 269 0
JFMB01000188 264 0
JFMB01000082 264 0
JFMB01000062 264 0
JFMB01000238 263 0
JFMB01000156 263 0
JFMB01000185 262 0
JFMB01000022 260 0
JFMB01000086 256 0
JFMB01000038 255 0
JFMB01000223 251 0
JFMB01000197 250 0
JFMB01000108 250 0
JFMB01000075 250 0
JFMB01000013 249 0
JFMB01000140 249 0
JFMB01000206 248 0
JFMB01000067 248 0
JFMB01000189 246 0
JFMB01000047 246 0
JFMB01000085 245 0
JFMB01000046 245 0
JFMB01000263 245 0
JFMB01000201 242 0
JFMB01000088 241 0
JFMB01000184 241 0
JFMB01000163 240 0
JFMB01000267 240 0
JFMB01000205 240 0
JFMB01000055 239 0
JFMB01000069 237 0
JFMB01000268 236 0
JFMB01000183 236 0
JFMB01000175 235 0
JFMB01000224 235 0
JFMB01000093 235 0
JFMB01000270 235 0
JFMB01000255 233 0
JFMB01000048 231 0
JFMB01000125 230 0
JFMB01000227 229 0
JFMB01000182 228 0
JFMB01000122 227 0
JFMB01000060 225 0
JFMB01000243 225 0
JFMB01000260 224 0
JFMB01000159 223 0
JFMB01000242 220 0
JFMB01000258 220 0
JFMB01000011 218 0
JFMB01000219 217 0
JFMB01000269 216 0
JFMB01000061 216 0
JFMB01000135 215 0
JFMB01000173 214 0
JFMB01000071 211 0
JFMB01000070 209 0
JFMB01000196 209 0
JFMB01000221 207 0
JFMB01000035 207 0
JFMB01000037 205 0
JFMB01000261 205 0
JFMB01000266 204 0
JFMB01000217 204 0
JFMB01000235 203 0
JFMB01000199 203 0
JFMB01000259 203 0
JFMB01000233 202 0
JFMB01000256 202 0
JFMB01000134 202 0
JFMB01000092 202 0
JFMB01000044 201 0
JFMB01000187 201 0
JFMB01000257 201 0
JFMB01000264 200 0
Total 986,037 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634875.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634875.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634875.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634875.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634875.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634875.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634875.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634875.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634875.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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