cyanobase » Prochlorococcus sp. scB243_495N4

Prochlorococcus sp. scB243_495N4

Summary

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Data source name GCA_000634855.1
Full name Prochlorococcus sp. scB243_495N4 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMA01000340 105,740 0
JFMA01000406 88,128 0
JFMA01000423 64,265 0
JFMA01000254 55,249 0
JFMA01000003 52,101 0
JFMA01000031 45,989 0
JFMA01000402 44,088 0
JFMA01000091 41,785 0
JFMA01000215 40,213 0
JFMA01000005 40,072 0
JFMA01000405 38,846 0
JFMA01000369 34,717 0
JFMA01000227 23,714 0
JFMA01000415 22,536 0
JFMA01000173 19,513 0
JFMA01000062 17,795 0
JFMA01000341 14,839 0
JFMA01000401 14,275 0
JFMA01000253 13,198 0
JFMA01000118 12,912 0
JFMA01000214 10,518 0
JFMA01000312 10,450 0
JFMA01000117 10,274 0
JFMA01000333 9,873 0
JFMA01000338 8,922 0
JFMA01000502 8,176 0
JFMA01000216 8,042 0
JFMA01000455 7,666 0
JFMA01000343 6,381 0
JFMA01000085 6,144 0
JFMA01000413 5,608 0
JFMA01000503 4,626 0
JFMA01000002 4,423 0
JFMA01000087 3,884 0
JFMA01000313 3,739 0
JFMA01000061 3,729 0
JFMA01000431 3,398 0
JFMA01000456 3,334 0
JFMA01000404 3,018 0
JFMA01000060 2,949 0
JFMA01000226 2,866 0
JFMA01000495 2,688 0
JFMA01000403 2,663 0
JFMA01000001 2,622 0
JFMA01000513 2,582 0
JFMA01000088 2,567 0
JFMA01000030 2,402 0
JFMA01000344 2,385 0
JFMA01000305 2,289 0
JFMA01000116 2,276 0
JFMA01000251 2,267 0
JFMA01000376 2,259 0
JFMA01000379 2,257 0
JFMA01000172 2,229 0
JFMA01000083 2,210 0
JFMA01000457 2,142 0
JFMA01000120 1,955 0
JFMA01000188 1,856 0
JFMA01000256 1,851 0
JFMA01000015 1,849 0
JFMA01000342 1,782 0
JFMA01000229 1,718 0
JFMA01000032 1,655 0
JFMA01000364 1,627 0
JFMA01000460 1,567 0
JFMA01000257 1,550 0
JFMA01000504 1,409 0
JFMA01000189 1,395 0
JFMA01000514 1,365 0
JFMA01000240 1,351 0
JFMA01000280 1,339 0
JFMA01000264 1,338 0
JFMA01000137 1,332 0
JFMA01000339 1,326 0
JFMA01000496 1,301 0
JFMA01000378 1,281 0
JFMA01000020 1,229 0
JFMA01000334 1,229 0
JFMA01000428 1,226 0
JFMA01000368 1,206 0
JFMA01000124 1,199 0
JFMA01000022 1,190 0
JFMA01000335 1,180 0
JFMA01000213 1,160 0
JFMA01000424 1,150 0
JFMA01000315 1,146 0
JFMA01000323 1,129 0
JFMA01000377 1,123 0
JFMA01000425 1,117 0
JFMA01000348 1,103 0
JFMA01000244 1,101 0
JFMA01000289 1,096 0
JFMA01000093 1,095 0
JFMA01000017 1,088 0
JFMA01000013 1,085 0
JFMA01000048 1,078 0
JFMA01000014 1,075 0
JFMA01000361 1,072 0
JFMA01000384 1,071 0
JFMA01000304 1,064 0
JFMA01000336 1,057 0
JFMA01000106 1,055 0
JFMA01000179 1,051 0
JFMA01000049 1,036 0
JFMA01000458 1,022 0
JFMA01000459 995 0
JFMA01000252 995 0
JFMA01000010 982 0
JFMA01000362 965 0
JFMA01000050 934 0
JFMA01000021 929 0
JFMA01000465 925 0
JFMA01000248 924 0
JFMA01000247 918 0
JFMA01000209 912 0
JFMA01000203 911 0
JFMA01000051 911 0
JFMA01000131 909 0
JFMA01000515 903 0
JFMA01000294 900 0
JFMA01000134 898 0
JFMA01000516 895 0
JFMA01000506 895 0
JFMA01000126 895 0
JFMA01000357 891 0
JFMA01000102 891 0
JFMA01000094 888 0
JFMA01000463 880 0
JFMA01000283 863 0
JFMA01000113 861 0
JFMA01000383 858 0
JFMA01000471 846 0
JFMA01000123 839 0
JFMA01000041 820 0
JFMA01000477 819 0
JFMA01000337 817 0
JFMA01000011 802 0
JFMA01000317 800 0
JFMA01000186 783 0
JFMA01000372 781 0
JFMA01000019 773 0
JFMA01000414 766 0
JFMA01000054 756 0
JFMA01000481 753 0
JFMA01000382 751 0
JFMA01000370 739 0
JFMA01000099 737 0
JFMA01000176 730 0
JFMA01000073 725 0
JFMA01000475 720 0
JFMA01000505 715 0
JFMA01000178 706 0
JFMA01000047 705 0
JFMA01000190 702 0
JFMA01000309 702 0
JFMA01000152 695 0
JFMA01000470 694 0
JFMA01000074 691 0
JFMA01000103 690 0
JFMA01000412 685 0
JFMA01000320 685 0
JFMA01000217 684 0
JFMA01000025 674 0
JFMA01000324 670 0
JFMA01000197 665 0
JFMA01000443 662 0
JFMA01000478 660 0
JFMA01000132 658 0
JFMA01000318 643 0
JFMA01000115 637 0
JFMA01000346 634 0
JFMA01000121 633 0
JFMA01000023 633 0
JFMA01000128 632 0
JFMA01000080 622 0
JFMA01000006 621 0
JFMA01000483 617 0
JFMA01000508 616 0
JFMA01000136 608 0
JFMA01000367 601 0
JFMA01000028 600 0
JFMA01000108 597 0
JFMA01000009 596 0
JFMA01000245 595 0
JFMA01000269 594 0
JFMA01000012 592 0
JFMA01000466 590 0
JFMA01000472 590 0
JFMA01000018 589 0
JFMA01000181 588 0
JFMA01000235 580 0
JFMA01000207 579 0
JFMA01000363 575 0
JFMA01000133 574 0
JFMA01000381 571 0
JFMA01000273 571 0
JFMA01000024 567 0
JFMA01000291 567 0
JFMA01000366 566 0
JFMA01000233 563 0
JFMA01000489 551 0
JFMA01000480 547 0
JFMA01000461 545 0
JFMA01000107 536 0
JFMA01000290 536 0
JFMA01000238 532 0
JFMA01000151 531 0
JFMA01000160 531 0
JFMA01000316 529 0
JFMA01000380 527 0
JFMA01000356 526 0
JFMA01000301 519 0
JFMA01000221 518 0
JFMA01000182 517 0
JFMA01000330 516 0
JFMA01000517 516 0
JFMA01000271 512 0
JFMA01000071 512 0
JFMA01000063 510 0
JFMA01000089 509 0
JFMA01000473 509 0
JFMA01000016 508 0
JFMA01000488 505 0
JFMA01000509 504 0
JFMA01000468 502 0
JFMA01000345 502 0
JFMA01000353 501 0
JFMA01000175 499 0
JFMA01000110 498 0
JFMA01000034 495 0
JFMA01000081 492 0
JFMA01000446 492 0
JFMA01000285 490 0
JFMA01000427 488 0
JFMA01000375 483 0
JFMA01000079 481 0
JFMA01000122 479 0
JFMA01000230 477 0
JFMA01000510 477 0
JFMA01000479 477 0
JFMA01000165 474 0
JFMA01000311 473 0
JFMA01000469 473 0
JFMA01000387 468 0
JFMA01000037 467 0
JFMA01000242 466 0
JFMA01000114 466 0
JFMA01000059 464 0
JFMA01000274 460 0
JFMA01000261 459 0
JFMA01000365 455 0
JFMA01000228 455 0
JFMA01000325 454 0
JFMA01000154 452 0
JFMA01000212 450 0
JFMA01000507 448 0
JFMA01000350 446 0
JFMA01000374 445 0
JFMA01000407 443 0
JFMA01000493 442 0
JFMA01000125 440 0
JFMA01000308 435 0
JFMA01000306 433 0
JFMA01000418 431 0
JFMA01000467 430 0
JFMA01000411 430 0
JFMA01000144 429 0
JFMA01000434 428 0
JFMA01000195 426 0
JFMA01000096 426 0
JFMA01000518 425 0
JFMA01000491 425 0
JFMA01000464 424 0
JFMA01000270 423 0
JFMA01000130 423 0
JFMA01000220 423 0
JFMA01000371 423 0
JFMA01000193 422 0
JFMA01000039 421 0
JFMA01000040 420 0
JFMA01000086 419 0
JFMA01000484 413 0
JFMA01000281 413 0
JFMA01000398 410 0
JFMA01000095 410 0
JFMA01000450 408 0
JFMA01000327 406 0
JFMA01000187 403 0
JFMA01000476 401 0
JFMA01000397 400 0
JFMA01000437 400 0
JFMA01000430 397 0
JFMA01000068 396 0
JFMA01000057 395 0
JFMA01000038 394 0
JFMA01000211 391 0
JFMA01000359 391 0
JFMA01000498 390 0
JFMA01000322 388 0
JFMA01000069 386 0
JFMA01000177 385 0
JFMA01000490 382 0
JFMA01000474 381 0
JFMA01000036 379 0
JFMA01000303 373 0
JFMA01000072 373 0
JFMA01000310 368 0
JFMA01000157 366 0
JFMA01000183 366 0
JFMA01000090 365 0
JFMA01000293 365 0
JFMA01000445 364 0
JFMA01000328 359 0
JFMA01000219 357 0
JFMA01000105 356 0
JFMA01000044 354 0
JFMA01000277 352 0
JFMA01000111 352 0
JFMA01000262 350 0
JFMA01000349 349 0
JFMA01000241 345 0
JFMA01000351 345 0
JFMA01000390 344 0
JFMA01000076 344 0
JFMA01000408 340 0
JFMA01000501 337 0
JFMA01000347 337 0
JFMA01000070 336 0
JFMA01000440 334 0
JFMA01000234 332 0
JFMA01000442 331 0
JFMA01000204 330 0
JFMA01000101 330 0
JFMA01000499 329 0
JFMA01000462 328 0
JFMA01000143 327 0
JFMA01000266 327 0
JFMA01000239 326 0
JFMA01000485 324 0
JFMA01000097 323 0
JFMA01000218 322 0
JFMA01000127 321 0
JFMA01000439 320 0
JFMA01000321 319 0
JFMA01000138 316 0
JFMA01000302 315 0
JFMA01000166 315 0
JFMA01000433 313 0
JFMA01000438 312 0
JFMA01000237 310 0
JFMA01000249 309 0
JFMA01000208 308 0
JFMA01000419 306 0
JFMA01000109 305 0
JFMA01000210 304 0
JFMA01000444 304 0
JFMA01000441 304 0
JFMA01000223 303 0
JFMA01000268 302 0
JFMA01000422 302 0
JFMA01000007 300 0
JFMA01000449 299 0
JFMA01000163 299 0
JFMA01000314 299 0
JFMA01000394 298 0
JFMA01000494 298 0
JFMA01000200 297 0
JFMA01000417 296 0
JFMA01000084 295 0
JFMA01000100 294 0
JFMA01000284 294 0
JFMA01000487 293 0
JFMA01000452 291 0
JFMA01000326 291 0
JFMA01000263 290 0
JFMA01000066 289 0
JFMA01000295 289 0
JFMA01000053 288 0
JFMA01000065 287 0
JFMA01000519 286 0
JFMA01000180 286 0
JFMA01000222 286 0
JFMA01000139 286 0
JFMA01000288 286 0
JFMA01000185 285 0
JFMA01000078 283 0
JFMA01000319 282 0
JFMA01000486 282 0
JFMA01000046 280 0
JFMA01000400 280 0
JFMA01000043 278 0
JFMA01000098 277 0
JFMA01000201 274 0
JFMA01000410 273 0
JFMA01000300 273 0
JFMA01000260 271 0
JFMA01000250 271 0
JFMA01000075 271 0
JFMA01000243 268 0
JFMA01000386 268 0
JFMA01000355 267 0
JFMA01000276 265 0
JFMA01000147 263 0
JFMA01000167 262 0
JFMA01000385 262 0
JFMA01000026 261 0
JFMA01000258 261 0
JFMA01000052 260 0
JFMA01000388 260 0
JFMA01000159 259 0
JFMA01000500 258 0
JFMA01000393 257 0
JFMA01000231 256 0
JFMA01000145 256 0
JFMA01000082 255 0
JFMA01000161 255 0
JFMA01000164 252 0
JFMA01000199 252 0
JFMA01000435 251 0
JFMA01000045 251 0
JFMA01000511 251 0
JFMA01000255 250 0
JFMA01000150 250 0
JFMA01000119 249 0
JFMA01000512 248 0
JFMA01000297 248 0
JFMA01000064 248 0
JFMA01000035 247 0
JFMA01000307 246 0
JFMA01000287 246 0
JFMA01000027 244 0
JFMA01000416 243 0
JFMA01000420 243 0
JFMA01000331 242 0
JFMA01000259 241 0
JFMA01000482 241 0
JFMA01000298 241 0
JFMA01000224 240 0
JFMA01000206 240 0
JFMA01000135 240 0
JFMA01000169 240 0
JFMA01000194 239 0
JFMA01000429 239 0
JFMA01000056 239 0
JFMA01000008 238 0
JFMA01000236 238 0
JFMA01000395 238 0
JFMA01000246 237 0
JFMA01000129 237 0
JFMA01000421 236 0
JFMA01000158 236 0
JFMA01000033 236 0
JFMA01000142 235 0
JFMA01000292 235 0
JFMA01000267 235 0
JFMA01000170 234 0
JFMA01000409 234 0
JFMA01000360 234 0
JFMA01000171 234 0
JFMA01000426 232 0
JFMA01000162 232 0
JFMA01000156 232 0
JFMA01000389 232 0
JFMA01000191 231 0
JFMA01000184 230 0
JFMA01000392 230 0
JFMA01000192 230 0
JFMA01000148 229 0
JFMA01000067 229 0
JFMA01000196 229 0
JFMA01000497 228 0
JFMA01000275 227 0
JFMA01000029 225 0
JFMA01000077 225 0
JFMA01000232 224 0
JFMA01000112 224 0
JFMA01000454 222 0
JFMA01000055 221 0
JFMA01000042 221 0
JFMA01000492 219 0
JFMA01000451 219 0
JFMA01000202 218 0
JFMA01000391 218 0
JFMA01000149 218 0
JFMA01000272 217 0
JFMA01000058 217 0
JFMA01000146 216 0
JFMA01000205 215 0
JFMA01000282 214 0
JFMA01000447 214 0
JFMA01000296 214 0
JFMA01000278 214 0
JFMA01000448 213 0
JFMA01000174 213 0
JFMA01000352 211 0
JFMA01000265 211 0
JFMA01000354 210 0
JFMA01000358 210 0
JFMA01000004 209 0
JFMA01000092 209 0
JFMA01000396 209 0
JFMA01000168 208 0
JFMA01000453 208 0
JFMA01000299 206 0
JFMA01000286 206 0
JFMA01000104 205 0
JFMA01000399 205 0
JFMA01000153 204 0
JFMA01000332 204 0
JFMA01000141 203 0
JFMA01000373 203 0
JFMA01000225 203 0
JFMA01000198 202 0
JFMA01000155 202 0
JFMA01000140 201 0
JFMA01000329 201 0
JFMA01000432 201 0
JFMA01000279 201 0
JFMA01000436 200 0
Total 1,192,256 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634855.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634855.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634855.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634855.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634855.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634855.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634855.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634855.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634855.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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