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cyanobase » Prochlorococcus sp. scB243_495I8

Prochlorococcus sp. scB243_495I8

Summary

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Data source name GCA_000634835.1
Full name Prochlorococcus sp. scB243_495I8
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLV01000189 34,671 0
JFLV01000021 27,560 0
JFLV01000046 20,793 0
JFLV01000076 18,192 0
JFLV01000190 17,866 0
JFLV01000199 16,282 0
JFLV01000029 15,620 0
JFLV01000200 13,861 0
JFLV01000063 13,099 0
JFLV01000217 11,568 0
JFLV01000196 11,360 0
JFLV01000174 7,220 0
JFLV01000044 7,182 0
JFLV01000229 6,043 0
JFLV01000049 5,835 0
JFLV01000008 5,124 0
JFLV01000083 5,123 0
JFLV01000020 4,672 0
JFLV01000045 4,467 0
JFLV01000053 4,132 0
JFLV01000169 4,065 0
JFLV01000100 3,649 0
JFLV01000007 3,320 0
JFLV01000171 3,289 0
JFLV01000197 3,121 0
JFLV01000048 3,042 0
JFLV01000027 2,666 0
JFLV01000137 2,236 0
JFLV01000047 2,211 0
JFLV01000077 1,866 0
JFLV01000195 1,835 0
JFLV01000173 1,758 0
JFLV01000161 1,492 0
JFLV01000026 1,487 0
JFLV01000198 1,297 0
JFLV01000072 1,209 0
JFLV01000191 1,202 0
JFLV01000187 1,182 0
JFLV01000136 1,177 0
JFLV01000030 1,131 0
JFLV01000006 1,109 0
JFLV01000025 1,090 0
JFLV01000060 1,052 0
JFLV01000031 1,025 0
JFLV01000005 1,020 0
JFLV01000101 971 0
JFLV01000091 958 0
JFLV01000145 956 0
JFLV01000069 938 0
JFLV01000002 929 0
JFLV01000188 921 0
JFLV01000054 873 0
JFLV01000084 868 0
JFLV01000094 856 0
JFLV01000163 825 0
JFLV01000176 797 0
JFLV01000228 781 0
JFLV01000219 781 0
JFLV01000102 761 0
JFLV01000022 759 0
JFLV01000018 755 0
JFLV01000079 751 0
JFLV01000127 740 0
JFLV01000056 695 0
JFLV01000016 674 0
JFLV01000104 635 0
JFLV01000194 613 0
JFLV01000095 612 0
JFLV01000098 586 0
JFLV01000001 569 0
JFLV01000146 568 0
JFLV01000160 566 0
JFLV01000205 562 0
JFLV01000132 560 0
JFLV01000073 554 0
JFLV01000015 546 0
JFLV01000081 543 0
JFLV01000080 525 0
JFLV01000177 525 0
JFLV01000071 524 0
JFLV01000144 522 0
JFLV01000123 520 0
JFLV01000103 496 0
JFLV01000149 483 0
JFLV01000184 483 0
JFLV01000099 483 0
JFLV01000143 482 0
JFLV01000226 481 0
JFLV01000036 471 0
JFLV01000150 468 0
JFLV01000182 456 0
JFLV01000055 456 0
JFLV01000070 452 0
JFLV01000142 443 0
JFLV01000092 434 0
JFLV01000024 433 0
JFLV01000152 425 0
JFLV01000213 425 0
JFLV01000167 424 0
JFLV01000043 421 0
JFLV01000023 417 0
JFLV01000019 414 0
JFLV01000075 407 0
JFLV01000004 403 0
JFLV01000180 388 0
JFLV01000153 386 0
JFLV01000216 381 0
JFLV01000157 377 0
JFLV01000125 376 0
JFLV01000159 375 0
JFLV01000192 372 0
JFLV01000068 372 0
JFLV01000109 372 0
JFLV01000035 371 0
JFLV01000009 370 0
JFLV01000138 369 0
JFLV01000051 368 0
JFLV01000082 363 0
JFLV01000175 363 0
JFLV01000105 357 0
JFLV01000052 356 0
JFLV01000172 355 0
JFLV01000067 351 0
JFLV01000158 345 0
JFLV01000032 344 0
JFLV01000050 343 0
JFLV01000193 336 0
JFLV01000119 335 0
JFLV01000135 334 0
JFLV01000154 329 0
JFLV01000097 327 0
JFLV01000222 322 0
JFLV01000122 318 0
JFLV01000126 317 0
JFLV01000057 313 0
JFLV01000038 312 0
JFLV01000164 311 0
JFLV01000221 310 0
JFLV01000058 307 0
JFLV01000223 305 0
JFLV01000178 303 0
JFLV01000181 302 0
JFLV01000014 300 0
JFLV01000186 300 0
JFLV01000013 300 0
JFLV01000107 299 0
JFLV01000130 294 0
JFLV01000179 292 0
JFLV01000017 292 0
JFLV01000209 291 0
JFLV01000011 290 0
JFLV01000155 289 0
JFLV01000227 288 0
JFLV01000185 286 0
JFLV01000106 284 0
JFLV01000141 284 0
JFLV01000117 282 0
JFLV01000183 281 0
JFLV01000124 279 0
JFLV01000108 279 0
JFLV01000139 278 0
JFLV01000039 277 0
JFLV01000166 277 0
JFLV01000115 275 0
JFLV01000203 275 0
JFLV01000212 274 0
JFLV01000128 270 0
JFLV01000165 269 0
JFLV01000204 268 0
JFLV01000012 266 0
JFLV01000129 266 0
JFLV01000140 265 0
JFLV01000089 261 0
JFLV01000224 258 0
JFLV01000093 257 0
JFLV01000162 256 0
JFLV01000041 254 0
JFLV01000086 253 0
JFLV01000118 251 0
JFLV01000112 251 0
JFLV01000096 250 0
JFLV01000033 250 0
JFLV01000087 250 0
JFLV01000003 249 0
JFLV01000202 248 0
JFLV01000156 245 0
JFLV01000168 244 0
JFLV01000116 243 0
JFLV01000066 242 0
JFLV01000062 240 0
JFLV01000037 240 0
JFLV01000133 239 0
JFLV01000085 238 0
JFLV01000170 237 0
JFLV01000151 236 0
JFLV01000028 230 0
JFLV01000215 230 0
JFLV01000220 229 0
JFLV01000211 228 0
JFLV01000218 227 0
JFLV01000208 223 0
JFLV01000206 223 0
JFLV01000201 223 0
JFLV01000148 222 0
JFLV01000061 220 0
JFLV01000074 220 0
JFLV01000131 218 0
JFLV01000230 218 0
JFLV01000110 217 0
JFLV01000120 217 0
JFLV01000064 216 0
JFLV01000010 215 0
JFLV01000088 214 0
JFLV01000040 214 0
JFLV01000114 213 0
JFLV01000065 212 0
JFLV01000210 212 0
JFLV01000121 211 0
JFLV01000207 211 0
JFLV01000042 209 0
JFLV01000111 208 0
JFLV01000059 208 0
JFLV01000225 207 0
JFLV01000134 206 0
JFLV01000034 205 0
JFLV01000113 205 0
JFLV01000147 203 0
JFLV01000090 201 0
JFLV01000214 201 0
JFLV01000078 201 0
JFLV01000231 201 0
Total 370,192 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634835.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634835.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634835.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634835.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634835.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634835.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634835.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634835.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634835.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634835.1/genes/interpro.txt (File format)

MicrobeBase