cyanobase » Prochlorococcus sp. scB243_495G23

Prochlorococcus sp. scB243_495G23

Summary

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Data source name GCA_000634815.1
Full name Prochlorococcus sp. scB243_495G23 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLU01000352 274,846 0
JFLU01000345 203,774 0
JFLU01000247 146,450 0
JFLU01000112 125,614 0
JFLU01000346 113,234 0
JFLU01000336 103,475 0
JFLU01000098 61,380 0
JFLU01000137 40,471 0
JFLU01000017 27,281 0
JFLU01000136 23,150 0
JFLU01000222 16,214 0
JFLU01000099 15,373 0
JFLU01000124 13,667 0
JFLU01000224 13,419 0
JFLU01000227 11,713 0
JFLU01000214 11,566 0
JFLU01000350 8,046 0
JFLU01000192 7,723 0
JFLU01000223 5,861 0
JFLU01000138 5,646 0
JFLU01000018 5,338 0
JFLU01000135 5,070 0
JFLU01000196 4,910 0
JFLU01000110 4,556 0
JFLU01000001 4,477 0
JFLU01000351 4,433 0
JFLU01000337 4,128 0
JFLU01000097 4,008 0
JFLU01000347 3,441 0
JFLU01000259 2,722 0
JFLU01000331 2,692 0
JFLU01000250 2,640 0
JFLU01000330 2,366 0
JFLU01000191 2,342 0
JFLU01000362 2,276 0
JFLU01000248 2,122 0
JFLU01000193 1,965 0
JFLU01000026 1,740 0
JFLU01000111 1,719 0
JFLU01000194 1,706 0
JFLU01000125 1,697 0
JFLU01000333 1,599 0
JFLU01000221 1,573 0
JFLU01000348 1,571 0
JFLU01000249 1,538 0
JFLU01000023 1,537 0
JFLU01000121 1,535 0
JFLU01000119 1,525 0
JFLU01000361 1,518 0
JFLU01000200 1,515 0
JFLU01000176 1,461 0
JFLU01000363 1,412 0
JFLU01000226 1,408 0
JFLU01000019 1,381 0
JFLU01000229 1,332 0
JFLU01000167 1,310 0
JFLU01000298 1,213 0
JFLU01000052 1,196 0
JFLU01000126 1,170 0
JFLU01000175 1,169 0
JFLU01000140 1,156 0
JFLU01000066 1,138 0
JFLU01000252 1,081 0
JFLU01000318 1,061 0
JFLU01000118 999 0
JFLU01000195 991 0
JFLU01000260 980 0
JFLU01000199 967 0
JFLU01000134 948 0
JFLU01000189 942 0
JFLU01000313 906 0
JFLU01000120 903 0
JFLU01000123 889 0
JFLU01000024 873 0
JFLU01000309 867 0
JFLU01000131 865 0
JFLU01000314 861 0
JFLU01000035 856 0
JFLU01000261 855 0
JFLU01000384 845 0
JFLU01000190 827 0
JFLU01000258 821 0
JFLU01000048 804 0
JFLU01000233 803 0
JFLU01000253 802 0
JFLU01000315 797 0
JFLU01000056 796 0
JFLU01000367 794 0
JFLU01000039 781 0
JFLU01000274 777 0
JFLU01000213 739 0
JFLU01000045 735 0
JFLU01000020 730 0
JFLU01000127 721 0
JFLU01000371 694 0
JFLU01000266 692 0
JFLU01000128 683 0
JFLU01000032 677 0
JFLU01000122 676 0
JFLU01000218 671 0
JFLU01000210 669 0
JFLU01000168 652 0
JFLU01000284 647 0
JFLU01000011 642 0
JFLU01000280 639 0
JFLU01000186 628 0
JFLU01000268 628 0
JFLU01000109 616 0
JFLU01000143 614 0
JFLU01000316 599 0
JFLU01000370 591 0
JFLU01000130 588 0
JFLU01000220 573 0
JFLU01000053 568 0
JFLU01000312 566 0
JFLU01000197 563 0
JFLU01000071 557 0
JFLU01000038 553 0
JFLU01000205 544 0
JFLU01000386 542 0
JFLU01000095 538 0
JFLU01000043 534 0
JFLU01000057 528 0
JFLU01000165 522 0
JFLU01000072 509 0
JFLU01000050 507 0
JFLU01000297 507 0
JFLU01000215 504 0
JFLU01000030 503 0
JFLU01000270 500 0
JFLU01000173 498 0
JFLU01000198 495 0
JFLU01000217 494 0
JFLU01000012 493 0
JFLU01000335 486 0
JFLU01000116 484 0
JFLU01000307 477 0
JFLU01000243 473 0
JFLU01000368 471 0
JFLU01000294 468 0
JFLU01000151 466 0
JFLU01000014 462 0
JFLU01000004 460 0
JFLU01000211 460 0
JFLU01000070 458 0
JFLU01000064 457 0
JFLU01000278 452 0
JFLU01000240 452 0
JFLU01000129 452 0
JFLU01000164 449 0
JFLU01000349 442 0
JFLU01000008 440 0
JFLU01000344 439 0
JFLU01000188 437 0
JFLU01000324 434 0
JFLU01000076 433 0
JFLU01000209 430 0
JFLU01000310 429 0
JFLU01000031 426 0
JFLU01000115 424 0
JFLU01000041 422 0
JFLU01000202 421 0
JFLU01000376 421 0
JFLU01000216 420 0
JFLU01000142 419 0
JFLU01000380 418 0
JFLU01000078 418 0
JFLU01000067 416 0
JFLU01000255 416 0
JFLU01000154 415 0
JFLU01000080 411 0
JFLU01000132 409 0
JFLU01000269 407 0
JFLU01000051 406 0
JFLU01000160 405 0
JFLU01000257 405 0
JFLU01000073 404 0
JFLU01000308 404 0
JFLU01000148 403 0
JFLU01000117 398 0
JFLU01000087 397 0
JFLU01000150 395 0
JFLU01000203 393 0
JFLU01000157 388 0
JFLU01000044 387 0
JFLU01000103 384 0
JFLU01000302 384 0
JFLU01000201 383 0
JFLU01000332 381 0
JFLU01000106 381 0
JFLU01000207 380 0
JFLU01000271 375 0
JFLU01000113 371 0
JFLU01000172 370 0
JFLU01000028 368 0
JFLU01000058 368 0
JFLU01000276 367 0
JFLU01000085 366 0
JFLU01000272 366 0
JFLU01000104 356 0
JFLU01000144 354 0
JFLU01000281 354 0
JFLU01000089 354 0
JFLU01000063 353 0
JFLU01000074 351 0
JFLU01000244 350 0
JFLU01000180 349 0
JFLU01000230 347 0
JFLU01000047 345 0
JFLU01000219 342 0
JFLU01000086 338 0
JFLU01000114 338 0
JFLU01000241 338 0
JFLU01000366 338 0
JFLU01000320 337 0
JFLU01000105 337 0
JFLU01000265 336 0
JFLU01000042 333 0
JFLU01000027 332 0
JFLU01000021 332 0
JFLU01000059 330 0
JFLU01000369 330 0
JFLU01000287 328 0
JFLU01000139 328 0
JFLU01000385 325 0
JFLU01000037 323 0
JFLU01000179 323 0
JFLU01000238 322 0
JFLU01000381 321 0
JFLU01000383 319 0
JFLU01000262 318 0
JFLU01000277 316 0
JFLU01000319 316 0
JFLU01000267 316 0
JFLU01000055 315 0
JFLU01000364 314 0
JFLU01000159 314 0
JFLU01000263 313 0
JFLU01000377 313 0
JFLU01000317 313 0
JFLU01000305 313 0
JFLU01000273 313 0
JFLU01000049 313 0
JFLU01000379 311 0
JFLU01000034 311 0
JFLU01000005 309 0
JFLU01000013 309 0
JFLU01000060 308 0
JFLU01000329 306 0
JFLU01000206 306 0
JFLU01000323 304 0
JFLU01000251 303 0
JFLU01000022 303 0
JFLU01000231 303 0
JFLU01000181 301 0
JFLU01000236 298 0
JFLU01000301 297 0
JFLU01000342 295 0
JFLU01000170 294 0
JFLU01000007 293 0
JFLU01000326 293 0
JFLU01000387 293 0
JFLU01000015 292 0
JFLU01000062 289 0
JFLU01000171 288 0
JFLU01000334 288 0
JFLU01000299 285 0
JFLU01000306 283 0
JFLU01000046 281 0
JFLU01000290 281 0
JFLU01000025 281 0
JFLU01000322 281 0
JFLU01000321 279 0
JFLU01000003 279 0
JFLU01000036 278 0
JFLU01000088 278 0
JFLU01000356 277 0
JFLU01000303 277 0
JFLU01000245 277 0
JFLU01000084 276 0
JFLU01000328 275 0
JFLU01000264 274 0
JFLU01000291 273 0
JFLU01000357 273 0
JFLU01000341 273 0
JFLU01000081 272 0
JFLU01000083 272 0
JFLU01000283 272 0
JFLU01000311 272 0
JFLU01000187 270 0
JFLU01000378 266 0
JFLU01000161 265 0
JFLU01000355 265 0
JFLU01000178 263 0
JFLU01000289 263 0
JFLU01000286 262 0
JFLU01000162 262 0
JFLU01000102 260 0
JFLU01000158 260 0
JFLU01000293 259 0
JFLU01000002 259 0
JFLU01000182 258 0
JFLU01000365 258 0
JFLU01000372 257 0
JFLU01000079 256 0
JFLU01000246 254 0
JFLU01000279 254 0
JFLU01000183 252 0
JFLU01000029 251 0
JFLU01000090 250 0
JFLU01000016 248 0
JFLU01000374 247 0
JFLU01000212 246 0
JFLU01000108 245 0
JFLU01000354 242 0
JFLU01000075 242 0
JFLU01000094 241 0
JFLU01000133 240 0
JFLU01000204 239 0
JFLU01000054 238 0
JFLU01000163 237 0
JFLU01000146 237 0
JFLU01000228 237 0
JFLU01000061 236 0
JFLU01000177 236 0
JFLU01000077 235 0
JFLU01000185 234 0
JFLU01000382 234 0
JFLU01000285 234 0
JFLU01000275 233 0
JFLU01000373 233 0
JFLU01000208 232 0
JFLU01000325 232 0
JFLU01000339 232 0
JFLU01000295 231 0
JFLU01000174 231 0
JFLU01000091 230 0
JFLU01000338 230 0
JFLU01000256 230 0
JFLU01000343 230 0
JFLU01000288 229 0
JFLU01000096 227 0
JFLU01000093 226 0
JFLU01000149 225 0
JFLU01000237 224 0
JFLU01000107 224 0
JFLU01000069 223 0
JFLU01000156 222 0
JFLU01000327 222 0
JFLU01000152 222 0
JFLU01000304 221 0
JFLU01000009 221 0
JFLU01000184 221 0
JFLU01000340 220 0
JFLU01000068 220 0
JFLU01000232 219 0
JFLU01000282 219 0
JFLU01000169 219 0
JFLU01000239 218 0
JFLU01000006 218 0
JFLU01000141 217 0
JFLU01000300 216 0
JFLU01000100 216 0
JFLU01000153 216 0
JFLU01000242 216 0
JFLU01000010 215 0
JFLU01000166 214 0
JFLU01000082 212 0
JFLU01000092 212 0
JFLU01000359 210 0
JFLU01000235 210 0
JFLU01000225 210 0
JFLU01000375 210 0
JFLU01000358 208 0
JFLU01000101 208 0
JFLU01000065 207 0
JFLU01000155 206 0
JFLU01000145 206 0
JFLU01000147 205 0
JFLU01000234 205 0
JFLU01000353 204 0
JFLU01000360 204 0
JFLU01000254 202 0
JFLU01000033 202 0
JFLU01000296 201 0
JFLU01000292 200 0
JFLU01000040 200 0
Total 1,452,952 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634815.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634815.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634815.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634815.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634815.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634815.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634815.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634815.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634815.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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