cyanobase » Prochlorococcus sp. scB241_528N8

Prochlorococcus sp. scB241_528N8

Summary

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Data source name GCA_000634775.1
Full name Prochlorococcus sp. scB241_528N8 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLI01000110 146,516 0
JFLI01000159 132,953 0
JFLI01000003 87,761 0
JFLI01000248 86,878 0
JFLI01000304 64,372 0
JFLI01000002 63,208 0
JFLI01000290 59,308 0
JFLI01000001 54,917 0
JFLI01000243 53,024 0
JFLI01000231 52,283 0
JFLI01000004 52,095 0
JFLI01000097 48,861 0
JFLI01000244 40,423 0
JFLI01000188 35,473 0
JFLI01000039 27,733 0
JFLI01000146 26,843 0
JFLI01000202 26,056 0
JFLI01000186 25,376 0
JFLI01000230 16,355 0
JFLI01000085 13,068 0
JFLI01000302 12,876 0
JFLI01000289 12,297 0
JFLI01000288 11,711 0
JFLI01000098 11,234 0
JFLI01000287 10,074 0
JFLI01000306 8,542 0
JFLI01000325 8,128 0
JFLI01000187 6,863 0
JFLI01000082 4,869 0
JFLI01000305 4,634 0
JFLI01000158 4,124 0
JFLI01000084 4,100 0
JFLI01000291 3,772 0
JFLI01000312 3,625 0
JFLI01000124 3,483 0
JFLI01000166 3,381 0
JFLI01000005 3,107 0
JFLI01000303 3,097 0
JFLI01000229 3,011 0
JFLI01000157 2,943 0
JFLI01000129 2,306 0
JFLI01000083 2,249 0
JFLI01000143 2,222 0
JFLI01000034 2,044 0
JFLI01000042 2,018 0
JFLI01000327 1,854 0
JFLI01000251 1,669 0
JFLI01000154 1,662 0
JFLI01000008 1,402 0
JFLI01000123 1,374 0
JFLI01000099 1,300 0
JFLI01000201 1,262 0
JFLI01000007 1,224 0
JFLI01000245 1,195 0
JFLI01000038 1,188 0
JFLI01000286 1,178 0
JFLI01000218 1,173 0
JFLI01000125 1,173 0
JFLI01000203 1,143 0
JFLI01000242 1,139 0
JFLI01000040 1,093 0
JFLI01000323 1,078 0
JFLI01000311 1,070 0
JFLI01000043 1,015 0
JFLI01000165 1,007 0
JFLI01000021 999 0
JFLI01000292 983 0
JFLI01000199 955 0
JFLI01000041 914 0
JFLI01000006 910 0
JFLI01000326 903 0
JFLI01000010 892 0
JFLI01000109 872 0
JFLI01000241 868 0
JFLI01000035 854 0
JFLI01000313 848 0
JFLI01000141 830 0
JFLI01000118 817 0
JFLI01000162 800 0
JFLI01000160 800 0
JFLI01000088 790 0
JFLI01000204 769 0
JFLI01000299 753 0
JFLI01000047 742 0
JFLI01000086 726 0
JFLI01000156 706 0
JFLI01000174 703 0
JFLI01000104 686 0
JFLI01000213 674 0
JFLI01000126 670 0
JFLI01000293 666 0
JFLI01000122 665 0
JFLI01000314 658 0
JFLI01000009 645 0
JFLI01000300 640 0
JFLI01000053 634 0
JFLI01000297 634 0
JFLI01000168 632 0
JFLI01000301 618 0
JFLI01000128 615 0
JFLI01000161 614 0
JFLI01000296 599 0
JFLI01000240 595 0
JFLI01000197 593 0
JFLI01000149 591 0
JFLI01000315 585 0
JFLI01000181 578 0
JFLI01000131 578 0
JFLI01000228 562 0
JFLI01000076 560 0
JFLI01000253 551 0
JFLI01000144 546 0
JFLI01000252 544 0
JFLI01000152 543 0
JFLI01000046 542 0
JFLI01000119 531 0
JFLI01000049 527 0
JFLI01000102 526 0
JFLI01000120 519 0
JFLI01000331 513 0
JFLI01000239 512 0
JFLI01000127 504 0
JFLI01000328 500 0
JFLI01000012 499 0
JFLI01000020 495 0
JFLI01000272 492 0
JFLI01000209 489 0
JFLI01000022 487 0
JFLI01000081 480 0
JFLI01000227 478 0
JFLI01000016 472 0
JFLI01000254 460 0
JFLI01000044 459 0
JFLI01000273 456 0
JFLI01000019 454 0
JFLI01000232 441 0
JFLI01000268 439 0
JFLI01000111 435 0
JFLI01000155 435 0
JFLI01000269 435 0
JFLI01000087 434 0
JFLI01000093 433 0
JFLI01000222 432 0
JFLI01000138 431 0
JFLI01000037 430 0
JFLI01000250 429 0
JFLI01000205 428 0
JFLI01000182 426 0
JFLI01000142 424 0
JFLI01000069 421 0
JFLI01000073 418 0
JFLI01000167 413 0
JFLI01000036 410 0
JFLI01000066 409 0
JFLI01000171 403 0
JFLI01000091 400 0
JFLI01000260 398 0
JFLI01000050 397 0
JFLI01000226 394 0
JFLI01000015 394 0
JFLI01000206 390 0
JFLI01000060 386 0
JFLI01000224 386 0
JFLI01000151 382 0
JFLI01000316 382 0
JFLI01000211 380 0
JFLI01000070 377 0
JFLI01000150 375 0
JFLI01000284 375 0
JFLI01000031 375 0
JFLI01000045 374 0
JFLI01000025 373 0
JFLI01000116 372 0
JFLI01000089 363 0
JFLI01000180 362 0
JFLI01000072 361 0
JFLI01000263 358 0
JFLI01000013 357 0
JFLI01000106 357 0
JFLI01000139 352 0
JFLI01000048 346 0
JFLI01000322 340 0
JFLI01000061 336 0
JFLI01000277 335 0
JFLI01000295 334 0
JFLI01000163 334 0
JFLI01000058 334 0
JFLI01000282 332 0
JFLI01000114 330 0
JFLI01000132 330 0
JFLI01000030 329 0
JFLI01000259 327 0
JFLI01000057 326 0
JFLI01000246 326 0
JFLI01000103 326 0
JFLI01000318 325 0
JFLI01000092 325 0
JFLI01000321 322 0
JFLI01000249 321 0
JFLI01000233 319 0
JFLI01000192 318 0
JFLI01000017 316 0
JFLI01000023 315 0
JFLI01000153 312 0
JFLI01000032 310 0
JFLI01000320 308 0
JFLI01000237 308 0
JFLI01000018 308 0
JFLI01000175 308 0
JFLI01000170 308 0
JFLI01000208 307 0
JFLI01000195 302 0
JFLI01000055 300 0
JFLI01000275 298 0
JFLI01000332 295 0
JFLI01000212 294 0
JFLI01000172 294 0
JFLI01000113 294 0
JFLI01000324 293 0
JFLI01000308 292 0
JFLI01000196 291 0
JFLI01000176 291 0
JFLI01000077 291 0
JFLI01000264 291 0
JFLI01000056 287 0
JFLI01000283 287 0
JFLI01000274 285 0
JFLI01000270 284 0
JFLI01000262 284 0
JFLI01000071 284 0
JFLI01000112 284 0
JFLI01000329 283 0
JFLI01000140 282 0
JFLI01000190 280 0
JFLI01000217 278 0
JFLI01000223 278 0
JFLI01000059 278 0
JFLI01000184 277 0
JFLI01000214 277 0
JFLI01000169 276 0
JFLI01000101 276 0
JFLI01000185 276 0
JFLI01000193 275 0
JFLI01000276 275 0
JFLI01000280 273 0
JFLI01000080 270 0
JFLI01000178 268 0
JFLI01000029 265 0
JFLI01000134 265 0
JFLI01000285 264 0
JFLI01000067 263 0
JFLI01000147 263 0
JFLI01000026 263 0
JFLI01000094 262 0
JFLI01000319 261 0
JFLI01000014 261 0
JFLI01000164 261 0
JFLI01000063 259 0
JFLI01000108 258 0
JFLI01000115 256 0
JFLI01000191 255 0
JFLI01000145 255 0
JFLI01000207 251 0
JFLI01000130 251 0
JFLI01000137 250 0
JFLI01000281 249 0
JFLI01000271 247 0
JFLI01000255 247 0
JFLI01000075 245 0
JFLI01000068 245 0
JFLI01000238 245 0
JFLI01000051 244 0
JFLI01000183 239 0
JFLI01000133 239 0
JFLI01000028 237 0
JFLI01000095 237 0
JFLI01000198 237 0
JFLI01000054 236 0
JFLI01000216 235 0
JFLI01000210 234 0
JFLI01000062 233 0
JFLI01000257 232 0
JFLI01000117 231 0
JFLI01000256 231 0
JFLI01000052 229 0
JFLI01000294 229 0
JFLI01000107 228 0
JFLI01000194 227 0
JFLI01000261 227 0
JFLI01000024 226 0
JFLI01000279 225 0
JFLI01000027 225 0
JFLI01000100 225 0
JFLI01000278 225 0
JFLI01000310 224 0
JFLI01000330 224 0
JFLI01000298 224 0
JFLI01000220 220 0
JFLI01000179 219 0
JFLI01000011 218 0
JFLI01000309 218 0
JFLI01000225 217 0
JFLI01000177 217 0
JFLI01000265 217 0
JFLI01000258 217 0
JFLI01000247 217 0
JFLI01000065 215 0
JFLI01000267 215 0
JFLI01000148 215 0
JFLI01000221 215 0
JFLI01000135 214 0
JFLI01000096 214 0
JFLI01000219 213 0
JFLI01000307 213 0
JFLI01000064 212 0
JFLI01000074 211 0
JFLI01000189 210 0
JFLI01000033 210 0
JFLI01000236 208 0
JFLI01000078 207 0
JFLI01000090 207 0
JFLI01000235 206 0
JFLI01000234 206 0
JFLI01000215 206 0
JFLI01000121 206 0
JFLI01000266 205 0
JFLI01000200 204 0
JFLI01000105 202 0
JFLI01000173 200 0
JFLI01000079 200 0
JFLI01000317 200 0
JFLI01000136 200 0
Total 1,378,439 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634775.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634775.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634775.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634775.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634775.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634775.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634775.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634775.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634775.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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