cyanobase » Prochlorococcus sp. scB241_528N17

Prochlorococcus sp. scB241_528N17

Summary

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Data source name GCA_000634735.1
Full name Prochlorococcus sp. scB241_528N17 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLG01000001 289,713 0
JFLG01000066 223,407 0
JFLG01000077 189,680 0
JFLG01000084 140,503 0
JFLG01000019 79,562 0
JFLG01000073 72,644 0
JFLG01000098 71,810 0
JFLG01000088 67,142 0
JFLG01000082 55,216 0
JFLG01000074 46,842 0
JFLG01000085 36,541 0
JFLG01000065 35,339 0
JFLG01000083 27,637 0
JFLG01000086 20,258 0
JFLG01000015 18,818 0
JFLG01000087 17,543 0
JFLG01000081 14,441 0
JFLG01000079 12,607 0
JFLG01000078 10,576 0
JFLG01000064 9,664 0
JFLG01000080 4,885 0
JFLG01000076 4,729 0
JFLG01000129 4,714 0
JFLG01000060 4,212 0
JFLG01000031 3,305 0
JFLG01000055 2,581 0
JFLG01000108 2,580 0
JFLG01000136 2,280 0
JFLG01000106 1,644 0
JFLG01000012 1,599 0
JFLG01000107 1,538 0
JFLG01000039 1,447 0
JFLG01000041 1,345 0
JFLG01000032 1,314 0
JFLG01000090 1,246 0
JFLG01000058 1,220 0
JFLG01000038 1,191 0
JFLG01000008 1,121 0
JFLG01000115 1,114 0
JFLG01000053 1,102 0
JFLG01000061 1,055 0
JFLG01000144 985 0
JFLG01000020 939 0
JFLG01000056 933 0
JFLG01000023 928 0
JFLG01000116 887 0
JFLG01000110 856 0
JFLG01000017 847 0
JFLG01000021 829 0
JFLG01000089 802 0
JFLG01000010 774 0
JFLG01000013 768 0
JFLG01000063 753 0
JFLG01000040 741 0
JFLG01000143 731 0
JFLG01000037 728 0
JFLG01000052 724 0
JFLG01000118 721 0
JFLG01000018 709 0
JFLG01000114 694 0
JFLG01000101 670 0
JFLG01000043 643 0
JFLG01000050 641 0
JFLG01000092 605 0
JFLG01000027 605 0
JFLG01000057 585 0
JFLG01000005 568 0
JFLG01000029 565 0
JFLG01000103 558 0
JFLG01000091 534 0
JFLG01000122 512 0
JFLG01000059 507 0
JFLG01000016 506 0
JFLG01000062 493 0
JFLG01000054 481 0
JFLG01000142 476 0
JFLG01000030 458 0
JFLG01000070 446 0
JFLG01000033 440 0
JFLG01000003 434 0
JFLG01000127 414 0
JFLG01000045 404 0
JFLG01000105 390 0
JFLG01000024 388 0
JFLG01000006 386 0
JFLG01000047 385 0
JFLG01000094 373 0
JFLG01000109 373 0
JFLG01000130 363 0
JFLG01000034 355 0
JFLG01000095 355 0
JFLG01000051 346 0
JFLG01000042 346 0
JFLG01000093 344 0
JFLG01000049 344 0
JFLG01000071 340 0
JFLG01000128 336 0
JFLG01000117 334 0
JFLG01000007 327 0
JFLG01000046 320 0
JFLG01000126 318 0
JFLG01000121 312 0
JFLG01000004 308 0
JFLG01000025 306 0
JFLG01000113 306 0
JFLG01000011 305 0
JFLG01000104 292 0
JFLG01000069 289 0
JFLG01000112 288 0
JFLG01000067 285 0
JFLG01000119 255 0
JFLG01000131 254 0
JFLG01000124 251 0
JFLG01000075 251 0
JFLG01000099 243 0
JFLG01000096 239 0
JFLG01000026 239 0
JFLG01000140 234 0
JFLG01000111 234 0
JFLG01000100 233 0
JFLG01000072 232 0
JFLG01000138 232 0
JFLG01000125 231 0
JFLG01000139 231 0
JFLG01000022 229 0
JFLG01000137 224 0
JFLG01000048 222 0
JFLG01000044 221 0
JFLG01000102 219 0
JFLG01000123 218 0
JFLG01000009 217 0
JFLG01000068 215 0
JFLG01000002 215 0
JFLG01000135 214 0
JFLG01000141 213 0
JFLG01000014 212 0
JFLG01000036 211 0
JFLG01000035 209 0
JFLG01000028 206 0
JFLG01000097 206 0
JFLG01000120 205 0
JFLG01000133 201 0
JFLG01000134 200 0
JFLG01000132 167 0
Total 1,530,056 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634735.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634735.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634735.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634735.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634735.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634735.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634735.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634735.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634735.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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