cyanobase » Prochlorococcus sp. scB241_528K19

Prochlorococcus sp. scB241_528K19

Summary

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Data source name GCA_000634715.1
Full name Prochlorococcus sp. scB241_528K19 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLF01000091 116,384 0
JFLF01000218 91,112 0
JFLF01000221 89,640 0
JFLF01000208 78,390 0
JFLF01000227 78,328 0
JFLF01000260 73,320 0
JFLF01000063 57,332 0
JFLF01000154 52,000 0
JFLF01000093 48,932 0
JFLF01000152 45,830 0
JFLF01000259 39,757 0
JFLF01000068 38,756 0
JFLF01000089 30,998 0
JFLF01000209 28,353 0
JFLF01000257 25,897 0
JFLF01000210 24,371 0
JFLF01000328 22,723 0
JFLF01000026 21,675 0
JFLF01000258 20,921 0
JFLF01000014 19,836 0
JFLF01000147 17,014 0
JFLF01000211 16,849 0
JFLF01000327 16,148 0
JFLF01000213 13,339 0
JFLF01000222 12,840 0
JFLF01000151 11,573 0
JFLF01000255 11,127 0
JFLF01000092 10,951 0
JFLF01000112 10,399 0
JFLF01000065 9,735 0
JFLF01000212 9,184 0
JFLF01000281 8,954 0
JFLF01000276 8,951 0
JFLF01000025 8,870 0
JFLF01000330 8,541 0
JFLF01000223 8,369 0
JFLF01000150 8,263 0
JFLF01000153 8,103 0
JFLF01000066 7,974 0
JFLF01000201 6,917 0
JFLF01000146 6,829 0
JFLF01000220 6,551 0
JFLF01000256 6,219 0
JFLF01000067 5,880 0
JFLF01000017 5,821 0
JFLF01000235 5,626 0
JFLF01000219 5,498 0
JFLF01000254 5,049 0
JFLF01000274 4,605 0
JFLF01000234 3,920 0
JFLF01000110 3,627 0
JFLF01000016 3,555 0
JFLF01000071 3,393 0
JFLF01000148 2,658 0
JFLF01000022 2,609 0
JFLF01000111 2,519 0
JFLF01000329 2,437 0
JFLF01000028 2,434 0
JFLF01000336 2,425 0
JFLF01000252 2,345 0
JFLF01000331 2,342 0
JFLF01000283 2,237 0
JFLF01000029 2,196 0
JFLF01000262 2,189 0
JFLF01000107 2,162 0
JFLF01000015 2,103 0
JFLF01000149 1,976 0
JFLF01000155 1,872 0
JFLF01000290 1,853 0
JFLF01000013 1,686 0
JFLF01000309 1,506 0
JFLF01000188 1,497 0
JFLF01000228 1,442 0
JFLF01000333 1,390 0
JFLF01000250 1,369 0
JFLF01000039 1,353 0
JFLF01000314 1,334 0
JFLF01000160 1,321 0
JFLF01000332 1,313 0
JFLF01000021 1,291 0
JFLF01000163 1,277 0
JFLF01000183 1,274 0
JFLF01000186 1,254 0
JFLF01000023 1,239 0
JFLF01000018 1,218 0
JFLF01000277 1,193 0
JFLF01000027 1,122 0
JFLF01000125 1,109 0
JFLF01000217 1,088 0
JFLF01000003 1,088 0
JFLF01000035 1,073 0
JFLF01000034 1,055 0
JFLF01000280 1,039 0
JFLF01000174 997 0
JFLF01000251 975 0
JFLF01000307 966 0
JFLF01000007 951 0
JFLF01000116 946 0
JFLF01000024 929 0
JFLF01000205 928 0
JFLF01000113 913 0
JFLF01000185 898 0
JFLF01000236 880 0
JFLF01000126 848 0
JFLF01000179 831 0
JFLF01000308 804 0
JFLF01000288 788 0
JFLF01000311 751 0
JFLF01000291 737 0
JFLF01000109 723 0
JFLF01000115 721 0
JFLF01000287 711 0
JFLF01000166 704 0
JFLF01000194 701 0
JFLF01000192 691 0
JFLF01000303 685 0
JFLF01000253 684 0
JFLF01000176 678 0
JFLF01000196 673 0
JFLF01000074 669 0
JFLF01000127 645 0
JFLF01000237 637 0
JFLF01000233 637 0
JFLF01000310 634 0
JFLF01000044 621 0
JFLF01000206 603 0
JFLF01000123 602 0
JFLF01000232 598 0
JFLF01000187 595 0
JFLF01000230 594 0
JFLF01000239 593 0
JFLF01000094 592 0
JFLF01000261 588 0
JFLF01000117 578 0
JFLF01000087 558 0
JFLF01000133 557 0
JFLF01000263 553 0
JFLF01000181 551 0
JFLF01000278 546 0
JFLF01000215 538 0
JFLF01000124 534 0
JFLF01000076 530 0
JFLF01000083 526 0
JFLF01000184 525 0
JFLF01000054 523 0
JFLF01000114 522 0
JFLF01000297 519 0
JFLF01000073 519 0
JFLF01000300 514 0
JFLF01000037 512 0
JFLF01000062 508 0
JFLF01000204 495 0
JFLF01000226 494 0
JFLF01000136 485 0
JFLF01000004 482 0
JFLF01000203 480 0
JFLF01000289 478 0
JFLF01000085 477 0
JFLF01000161 472 0
JFLF01000248 469 0
JFLF01000305 468 0
JFLF01000320 468 0
JFLF01000243 467 0
JFLF01000162 465 0
JFLF01000101 445 0
JFLF01000249 440 0
JFLF01000306 440 0
JFLF01000033 437 0
JFLF01000041 433 0
JFLF01000006 431 0
JFLF01000298 426 0
JFLF01000284 425 0
JFLF01000019 424 0
JFLF01000097 420 0
JFLF01000036 417 0
JFLF01000264 415 0
JFLF01000075 415 0
JFLF01000002 413 0
JFLF01000070 405 0
JFLF01000224 396 0
JFLF01000088 395 0
JFLF01000020 392 0
JFLF01000275 391 0
JFLF01000079 386 0
JFLF01000323 382 0
JFLF01000199 378 0
JFLF01000099 376 0
JFLF01000168 376 0
JFLF01000273 376 0
JFLF01000247 375 0
JFLF01000130 375 0
JFLF01000009 374 0
JFLF01000165 370 0
JFLF01000231 368 0
JFLF01000173 367 0
JFLF01000118 367 0
JFLF01000180 367 0
JFLF01000049 366 0
JFLF01000246 363 0
JFLF01000216 363 0
JFLF01000108 356 0
JFLF01000269 355 0
JFLF01000048 355 0
JFLF01000193 354 0
JFLF01000086 350 0
JFLF01000137 349 0
JFLF01000103 348 0
JFLF01000170 346 0
JFLF01000302 346 0
JFLF01000334 345 0
JFLF01000177 343 0
JFLF01000244 342 0
JFLF01000238 336 0
JFLF01000104 335 0
JFLF01000175 331 0
JFLF01000207 326 0
JFLF01000292 325 0
JFLF01000182 324 0
JFLF01000157 324 0
JFLF01000032 323 0
JFLF01000313 320 0
JFLF01000080 320 0
JFLF01000268 318 0
JFLF01000121 316 0
JFLF01000296 314 0
JFLF01000172 313 0
JFLF01000271 310 0
JFLF01000337 307 0
JFLF01000030 305 0
JFLF01000321 304 0
JFLF01000214 302 0
JFLF01000057 302 0
JFLF01000335 302 0
JFLF01000240 300 0
JFLF01000096 299 0
JFLF01000031 296 0
JFLF01000159 295 0
JFLF01000055 293 0
JFLF01000098 292 0
JFLF01000325 291 0
JFLF01000171 291 0
JFLF01000129 288 0
JFLF01000102 286 0
JFLF01000322 286 0
JFLF01000266 286 0
JFLF01000304 284 0
JFLF01000225 283 0
JFLF01000119 283 0
JFLF01000200 283 0
JFLF01000078 282 0
JFLF01000077 281 0
JFLF01000301 281 0
JFLF01000131 278 0
JFLF01000312 278 0
JFLF01000195 277 0
JFLF01000158 277 0
JFLF01000285 275 0
JFLF01000293 274 0
JFLF01000058 270 0
JFLF01000100 270 0
JFLF01000167 268 0
JFLF01000050 267 0
JFLF01000106 266 0
JFLF01000145 265 0
JFLF01000142 263 0
JFLF01000282 260 0
JFLF01000011 259 0
JFLF01000012 258 0
JFLF01000229 258 0
JFLF01000315 257 0
JFLF01000052 254 0
JFLF01000319 253 0
JFLF01000141 252 0
JFLF01000001 251 0
JFLF01000270 251 0
JFLF01000197 250 0
JFLF01000190 248 0
JFLF01000189 247 0
JFLF01000138 244 0
JFLF01000279 243 0
JFLF01000286 242 0
JFLF01000038 240 0
JFLF01000082 240 0
JFLF01000122 239 0
JFLF01000095 239 0
JFLF01000135 239 0
JFLF01000008 238 0
JFLF01000051 238 0
JFLF01000069 235 0
JFLF01000059 235 0
JFLF01000072 235 0
JFLF01000272 235 0
JFLF01000324 234 0
JFLF01000198 233 0
JFLF01000081 232 0
JFLF01000040 231 0
JFLF01000105 229 0
JFLF01000010 227 0
JFLF01000042 226 0
JFLF01000245 225 0
JFLF01000005 225 0
JFLF01000053 224 0
JFLF01000265 224 0
JFLF01000241 223 0
JFLF01000242 222 0
JFLF01000043 222 0
JFLF01000084 221 0
JFLF01000046 221 0
JFLF01000144 220 0
JFLF01000120 219 0
JFLF01000140 216 0
JFLF01000132 214 0
JFLF01000090 213 0
JFLF01000202 213 0
JFLF01000299 213 0
JFLF01000056 212 0
JFLF01000134 212 0
JFLF01000294 211 0
JFLF01000045 210 0
JFLF01000326 209 0
JFLF01000316 209 0
JFLF01000169 208 0
JFLF01000318 207 0
JFLF01000267 207 0
JFLF01000156 206 0
JFLF01000295 206 0
JFLF01000317 205 0
JFLF01000178 205 0
JFLF01000060 204 0
JFLF01000191 204 0
JFLF01000128 204 0
JFLF01000139 204 0
JFLF01000061 202 0
JFLF01000143 202 0
JFLF01000047 201 0
JFLF01000064 200 0
JFLF01000164 200 0
Total 1,448,089 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634715.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634715.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634715.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634715.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634715.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634715.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634715.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634715.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634715.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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