cyanobase » Prochlorococcus sp. scB241_527L15

Prochlorococcus sp. scB241_527L15

Summary

? | +/- | Top
Data source name GCA_000634695.1
Full name Prochlorococcus sp. scB241_527L15 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFKY01000131 73,840 0
JFKY01000185 72,757 0
JFKY01000199 70,852 0
JFKY01000135 68,832 0
JFKY01000193 62,208 0
JFKY01000238 58,908 0
JFKY01000012 48,877 0
JFKY01000237 45,342 0
JFKY01000096 44,466 0
JFKY01000251 33,580 0
JFKY01000151 30,724 0
JFKY01000288 30,513 0
JFKY01000002 24,735 0
JFKY01000001 24,709 0
JFKY01000282 24,618 0
JFKY01000150 24,228 0
JFKY01000249 23,719 0
JFKY01000167 23,534 0
JFKY01000126 20,073 0
JFKY01000080 19,313 0
JFKY01000127 19,097 0
JFKY01000143 18,382 0
JFKY01000206 16,989 0
JFKY01000250 13,284 0
JFKY01000122 13,272 0
JFKY01000205 9,517 0
JFKY01000189 9,056 0
JFKY01000204 8,668 0
JFKY01000095 8,214 0
JFKY01000236 7,715 0
JFKY01000123 7,320 0
JFKY01000286 6,684 0
JFKY01000121 6,650 0
JFKY01000146 6,529 0
JFKY01000168 6,278 0
JFKY01000276 5,541 0
JFKY01000289 5,326 0
JFKY01000003 5,317 0
JFKY01000125 5,252 0
JFKY01000295 5,147 0
JFKY01000283 5,088 0
JFKY01000247 4,934 0
JFKY01000149 4,671 0
JFKY01000192 3,878 0
JFKY01000284 3,782 0
JFKY01000152 3,671 0
JFKY01000130 3,165 0
JFKY01000128 2,957 0
JFKY01000246 2,771 0
JFKY01000060 2,674 0
JFKY01000188 2,485 0
JFKY01000274 2,482 0
JFKY01000011 2,455 0
JFKY01000296 2,315 0
JFKY01000091 2,262 0
JFKY01000078 2,232 0
JFKY01000136 2,225 0
JFKY01000004 2,078 0
JFKY01000235 1,864 0
JFKY01000061 1,828 0
JFKY01000194 1,768 0
JFKY01000234 1,714 0
JFKY01000093 1,711 0
JFKY01000111 1,684 0
JFKY01000059 1,632 0
JFKY01000028 1,610 0
JFKY01000114 1,573 0
JFKY01000076 1,561 0
JFKY01000110 1,513 0
JFKY01000029 1,493 0
JFKY01000248 1,434 0
JFKY01000129 1,400 0
JFKY01000094 1,382 0
JFKY01000198 1,314 0
JFKY01000191 1,285 0
JFKY01000292 1,201 0
JFKY01000233 1,166 0
JFKY01000293 1,125 0
JFKY01000089 1,117 0
JFKY01000113 1,110 0
JFKY01000281 1,088 0
JFKY01000142 1,072 0
JFKY01000062 1,047 0
JFKY01000190 1,043 0
JFKY01000163 1,015 0
JFKY01000200 999 0
JFKY01000184 998 0
JFKY01000026 991 0
JFKY01000253 983 0
JFKY01000141 982 0
JFKY01000165 968 0
JFKY01000166 956 0
JFKY01000043 938 0
JFKY01000010 893 0
JFKY01000057 890 0
JFKY01000148 890 0
JFKY01000022 872 0
JFKY01000048 872 0
JFKY01000102 857 0
JFKY01000079 855 0
JFKY01000112 844 0
JFKY01000090 843 0
JFKY01000088 835 0
JFKY01000252 817 0
JFKY01000290 797 0
JFKY01000201 788 0
JFKY01000241 733 0
JFKY01000133 725 0
JFKY01000187 701 0
JFKY01000086 671 0
JFKY01000115 671 0
JFKY01000218 664 0
JFKY01000207 654 0
JFKY01000055 639 0
JFKY01000280 623 0
JFKY01000220 621 0
JFKY01000273 608 0
JFKY01000279 607 0
JFKY01000068 601 0
JFKY01000074 600 0
JFKY01000156 597 0
JFKY01000100 597 0
JFKY01000084 587 0
JFKY01000045 585 0
JFKY01000144 560 0
JFKY01000183 551 0
JFKY01000215 547 0
JFKY01000285 541 0
JFKY01000050 532 0
JFKY01000037 518 0
JFKY01000278 515 0
JFKY01000266 514 0
JFKY01000109 512 0
JFKY01000065 511 0
JFKY01000081 511 0
JFKY01000005 510 0
JFKY01000118 508 0
JFKY01000063 492 0
JFKY01000208 491 0
JFKY01000082 484 0
JFKY01000299 480 0
JFKY01000217 476 0
JFKY01000018 474 0
JFKY01000077 459 0
JFKY01000031 459 0
JFKY01000268 452 0
JFKY01000223 450 0
JFKY01000036 449 0
JFKY01000294 445 0
JFKY01000155 444 0
JFKY01000066 437 0
JFKY01000272 429 0
JFKY01000087 426 0
JFKY01000256 409 0
JFKY01000014 409 0
JFKY01000071 408 0
JFKY01000024 408 0
JFKY01000054 406 0
JFKY01000196 399 0
JFKY01000277 399 0
JFKY01000182 398 0
JFKY01000072 395 0
JFKY01000275 393 0
JFKY01000099 392 0
JFKY01000032 389 0
JFKY01000224 388 0
JFKY01000147 386 0
JFKY01000047 383 0
JFKY01000195 379 0
JFKY01000051 376 0
JFKY01000064 375 0
JFKY01000030 374 0
JFKY01000270 374 0
JFKY01000219 373 0
JFKY01000154 370 0
JFKY01000260 369 0
JFKY01000020 367 0
JFKY01000221 364 0
JFKY01000015 362 0
JFKY01000203 362 0
JFKY01000044 352 0
JFKY01000134 351 0
JFKY01000186 349 0
JFKY01000117 349 0
JFKY01000175 347 0
JFKY01000052 346 0
JFKY01000222 346 0
JFKY01000006 342 0
JFKY01000075 337 0
JFKY01000056 337 0
JFKY01000139 336 0
JFKY01000073 334 0
JFKY01000213 332 0
JFKY01000240 331 0
JFKY01000058 330 0
JFKY01000243 326 0
JFKY01000291 325 0
JFKY01000132 322 0
JFKY01000263 321 0
JFKY01000211 321 0
JFKY01000046 316 0
JFKY01000216 315 0
JFKY01000230 315 0
JFKY01000124 313 0
JFKY01000153 311 0
JFKY01000137 310 0
JFKY01000242 309 0
JFKY01000120 306 0
JFKY01000053 305 0
JFKY01000177 305 0
JFKY01000008 304 0
JFKY01000042 304 0
JFKY01000067 301 0
JFKY01000103 300 0
JFKY01000229 299 0
JFKY01000025 297 0
JFKY01000164 297 0
JFKY01000013 294 0
JFKY01000178 292 0
JFKY01000033 292 0
JFKY01000231 291 0
JFKY01000021 288 0
JFKY01000181 288 0
JFKY01000041 288 0
JFKY01000160 287 0
JFKY01000179 285 0
JFKY01000245 283 0
JFKY01000016 280 0
JFKY01000298 277 0
JFKY01000209 275 0
JFKY01000027 270 0
JFKY01000085 268 0
JFKY01000049 267 0
JFKY01000108 266 0
JFKY01000197 265 0
JFKY01000158 265 0
JFKY01000083 264 0
JFKY01000138 263 0
JFKY01000106 263 0
JFKY01000107 260 0
JFKY01000210 258 0
JFKY01000265 258 0
JFKY01000258 257 0
JFKY01000140 257 0
JFKY01000254 256 0
JFKY01000162 254 0
JFKY01000271 252 0
JFKY01000092 249 0
JFKY01000262 247 0
JFKY01000297 247 0
JFKY01000159 245 0
JFKY01000255 241 0
JFKY01000070 239 0
JFKY01000287 235 0
JFKY01000035 235 0
JFKY01000116 234 0
JFKY01000119 234 0
JFKY01000227 233 0
JFKY01000104 233 0
JFKY01000202 232 0
JFKY01000105 231 0
JFKY01000232 231 0
JFKY01000264 231 0
JFKY01000069 230 0
JFKY01000174 230 0
JFKY01000039 230 0
JFKY01000157 229 0
JFKY01000145 228 0
JFKY01000009 224 0
JFKY01000034 224 0
JFKY01000038 223 0
JFKY01000173 223 0
JFKY01000172 222 0
JFKY01000161 221 0
JFKY01000040 221 0
JFKY01000269 221 0
JFKY01000017 219 0
JFKY01000257 217 0
JFKY01000228 216 0
JFKY01000244 216 0
JFKY01000259 215 0
JFKY01000023 215 0
JFKY01000239 214 0
JFKY01000019 213 0
JFKY01000098 212 0
JFKY01000169 211 0
JFKY01000261 211 0
JFKY01000101 211 0
JFKY01000267 211 0
JFKY01000097 209 0
JFKY01000180 207 0
JFKY01000225 206 0
JFKY01000170 206 0
JFKY01000214 206 0
JFKY01000171 202 0
JFKY01000007 201 0
JFKY01000176 201 0
JFKY01000212 201 0
JFKY01000226 201 0
Total 1,190,525 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000634695.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634695.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634695.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634695.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634695.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634695.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634695.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634695.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634695.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer