cyanobase » Prochlorococcus sp. scB241_527E15

Prochlorococcus sp. scB241_527E15

Summary

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Data source name GCA_000634675.1
Full name Prochlorococcus sp. scB241_527E15 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKV01000005 232,091 0
JFKV01000022 124,348 0
JFKV01000079 54,914 0
JFKV01000008 51,671 0
JFKV01000006 12,928 0
JFKV01000081 11,879 0
JFKV01000004 9,736 0
JFKV01000080 8,188 0
JFKV01000003 5,956 0
JFKV01000010 5,430 0
JFKV01000020 5,358 0
JFKV01000009 5,327 0
JFKV01000078 5,218 0
JFKV01000061 3,302 0
JFKV01000023 2,848 0
JFKV01000021 2,225 0
JFKV01000024 1,684 0
JFKV01000019 1,626 0
JFKV01000048 1,616 0
JFKV01000064 1,426 0
JFKV01000028 1,290 0
JFKV01000053 1,225 0
JFKV01000069 1,205 0
JFKV01000074 1,124 0
JFKV01000070 1,089 0
JFKV01000038 1,007 0
JFKV01000071 943 0
JFKV01000032 941 0
JFKV01000047 854 0
JFKV01000001 782 0
JFKV01000016 758 0
JFKV01000044 724 0
JFKV01000035 711 0
JFKV01000077 702 0
JFKV01000055 676 0
JFKV01000050 667 0
JFKV01000041 598 0
JFKV01000026 533 0
JFKV01000049 527 0
JFKV01000017 492 0
JFKV01000072 490 0
JFKV01000068 479 0
JFKV01000025 473 0
JFKV01000045 459 0
JFKV01000036 455 0
JFKV01000042 431 0
JFKV01000073 427 0
JFKV01000037 411 0
JFKV01000059 408 0
JFKV01000076 403 0
JFKV01000051 389 0
JFKV01000031 383 0
JFKV01000052 380 0
JFKV01000058 378 0
JFKV01000063 370 0
JFKV01000034 367 0
JFKV01000046 356 0
JFKV01000040 351 0
JFKV01000007 344 0
JFKV01000057 341 0
JFKV01000029 336 0
JFKV01000027 333 0
JFKV01000056 324 0
JFKV01000043 323 0
JFKV01000002 308 0
JFKV01000083 301 0
JFKV01000014 285 0
JFKV01000075 284 0
JFKV01000030 284 0
JFKV01000012 261 0
JFKV01000084 261 0
JFKV01000082 258 0
JFKV01000054 253 0
JFKV01000015 245 0
JFKV01000011 243 0
JFKV01000018 240 0
JFKV01000013 238 0
JFKV01000033 237 0
JFKV01000060 233 0
JFKV01000039 229 0
JFKV01000066 225 0
JFKV01000062 219 0
JFKV01000065 209 0
JFKV01000067 200 0
Total 579,043 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634675.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634675.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634675.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634675.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634675.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634675.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634675.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634675.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634675.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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