cyanobase » Prochlorococcus sp. scB241_526B19

Prochlorococcus sp. scB241_526B19

Summary

? | +/- | Top
Data source name GCA_000634615.1
Full name Prochlorococcus sp. scB241_526B19 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFKO01000127 68,664 0
JFKO01000062 60,365 0
JFKO01000217 57,539 0
JFKO01000052 25,959 0
JFKO01000198 20,987 0
JFKO01000170 17,350 0
JFKO01000216 16,636 0
JFKO01000006 15,358 0
JFKO01000003 11,569 0
JFKO01000173 10,906 0
JFKO01000007 10,696 0
JFKO01000128 8,801 0
JFKO01000219 7,075 0
JFKO01000215 6,221 0
JFKO01000009 5,955 0
JFKO01000218 5,695 0
JFKO01000008 5,394 0
JFKO01000054 4,268 0
JFKO01000129 4,071 0
JFKO01000130 3,732 0
JFKO01000179 3,499 0
JFKO01000005 3,406 0
JFKO01000056 2,946 0
JFKO01000004 2,715 0
JFKO01000094 1,960 0
JFKO01000174 1,942 0
JFKO01000022 1,771 0
JFKO01000055 1,770 0
JFKO01000064 1,734 0
JFKO01000053 1,690 0
JFKO01000168 1,666 0
JFKO01000050 1,576 0
JFKO01000091 1,572 0
JFKO01000024 1,172 0
JFKO01000199 1,100 0
JFKO01000178 1,051 0
JFKO01000164 1,021 0
JFKO01000097 1,016 0
JFKO01000081 993 0
JFKO01000066 827 0
JFKO01000073 814 0
JFKO01000090 809 0
JFKO01000061 800 0
JFKO01000095 787 0
JFKO01000096 763 0
JFKO01000169 762 0
JFKO01000044 747 0
JFKO01000175 732 0
JFKO01000176 725 0
JFKO01000036 718 0
JFKO01000172 673 0
JFKO01000001 671 0
JFKO01000043 663 0
JFKO01000077 660 0
JFKO01000068 652 0
JFKO01000177 633 0
JFKO01000047 627 0
JFKO01000070 622 0
JFKO01000183 621 0
JFKO01000057 592 0
JFKO01000069 586 0
JFKO01000209 571 0
JFKO01000033 569 0
JFKO01000067 556 0
JFKO01000092 527 0
JFKO01000010 524 0
JFKO01000165 520 0
JFKO01000019 518 0
JFKO01000180 517 0
JFKO01000197 515 0
JFKO01000014 511 0
JFKO01000021 502 0
JFKO01000026 500 0
JFKO01000201 499 0
JFKO01000034 496 0
JFKO01000027 485 0
JFKO01000185 484 0
JFKO01000171 476 0
JFKO01000016 464 0
JFKO01000203 462 0
JFKO01000154 460 0
JFKO01000192 457 0
JFKO01000207 450 0
JFKO01000046 447 0
JFKO01000202 437 0
JFKO01000204 437 0
JFKO01000072 425 0
JFKO01000002 425 0
JFKO01000141 418 0
JFKO01000018 417 0
JFKO01000200 395 0
JFKO01000145 393 0
JFKO01000152 386 0
JFKO01000099 384 0
JFKO01000134 381 0
JFKO01000093 378 0
JFKO01000089 374 0
JFKO01000085 373 0
JFKO01000181 364 0
JFKO01000084 362 0
JFKO01000162 360 0
JFKO01000060 352 0
JFKO01000023 352 0
JFKO01000025 352 0
JFKO01000148 348 0
JFKO01000059 348 0
JFKO01000030 345 0
JFKO01000020 343 0
JFKO01000051 342 0
JFKO01000229 329 0
JFKO01000150 326 0
JFKO01000206 322 0
JFKO01000156 320 0
JFKO01000109 316 0
JFKO01000231 316 0
JFKO01000135 314 0
JFKO01000063 312 0
JFKO01000082 311 0
JFKO01000045 310 0
JFKO01000230 303 0
JFKO01000074 303 0
JFKO01000167 303 0
JFKO01000041 302 0
JFKO01000032 301 0
JFKO01000222 297 0
JFKO01000191 294 0
JFKO01000098 288 0
JFKO01000071 286 0
JFKO01000013 284 0
JFKO01000137 283 0
JFKO01000049 283 0
JFKO01000076 280 0
JFKO01000221 279 0
JFKO01000048 278 0
JFKO01000205 278 0
JFKO01000124 276 0
JFKO01000194 275 0
JFKO01000104 273 0
JFKO01000214 273 0
JFKO01000106 272 0
JFKO01000136 271 0
JFKO01000212 271 0
JFKO01000058 270 0
JFKO01000155 270 0
JFKO01000234 270 0
JFKO01000028 270 0
JFKO01000079 268 0
JFKO01000086 268 0
JFKO01000233 267 0
JFKO01000113 267 0
JFKO01000151 264 0
JFKO01000182 263 0
JFKO01000116 263 0
JFKO01000075 259 0
JFKO01000040 256 0
JFKO01000126 254 0
JFKO01000078 253 0
JFKO01000035 252 0
JFKO01000017 252 0
JFKO01000102 251 0
JFKO01000208 250 0
JFKO01000123 249 0
JFKO01000144 249 0
JFKO01000220 249 0
JFKO01000114 249 0
JFKO01000146 246 0
JFKO01000088 244 0
JFKO01000101 244 0
JFKO01000163 243 0
JFKO01000143 243 0
JFKO01000031 243 0
JFKO01000065 239 0
JFKO01000149 239 0
JFKO01000226 237 0
JFKO01000107 235 0
JFKO01000210 234 0
JFKO01000190 234 0
JFKO01000147 232 0
JFKO01000100 232 0
JFKO01000111 232 0
JFKO01000125 231 0
JFKO01000038 231 0
JFKO01000042 231 0
JFKO01000132 231 0
JFKO01000158 229 0
JFKO01000187 229 0
JFKO01000224 228 0
JFKO01000213 228 0
JFKO01000153 228 0
JFKO01000211 227 0
JFKO01000184 227 0
JFKO01000120 226 0
JFKO01000140 226 0
JFKO01000080 225 0
JFKO01000195 224 0
JFKO01000139 224 0
JFKO01000119 224 0
JFKO01000131 220 0
JFKO01000110 219 0
JFKO01000161 218 0
JFKO01000117 217 0
JFKO01000012 217 0
JFKO01000235 216 0
JFKO01000015 215 0
JFKO01000189 214 0
JFKO01000087 214 0
JFKO01000232 214 0
JFKO01000083 213 0
JFKO01000121 212 0
JFKO01000223 212 0
JFKO01000118 212 0
JFKO01000108 211 0
JFKO01000105 211 0
JFKO01000193 211 0
JFKO01000157 211 0
JFKO01000196 210 0
JFKO01000186 209 0
JFKO01000188 209 0
JFKO01000011 209 0
JFKO01000037 209 0
JFKO01000133 209 0
JFKO01000029 208 0
JFKO01000225 208 0
JFKO01000166 207 0
JFKO01000039 207 0
JFKO01000115 206 0
JFKO01000138 206 0
JFKO01000159 205 0
JFKO01000103 205 0
JFKO01000142 204 0
JFKO01000122 203 0
JFKO01000227 202 0
JFKO01000228 202 0
JFKO01000112 202 0
JFKO01000160 200 0
Total 469,441 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000634615.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634615.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634615.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634615.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634615.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634615.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634615.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634615.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634615.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer