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cyanobase » Prochlorococcus sp. scB245a_521O23

Prochlorococcus sp. scB245a_521O23

Summary

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Data source name GCA_000634595.1
Full name Prochlorococcus sp. scB245a_521O23
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFOE01000052 137,351 0
JFOE01000139 60,276 0
JFOE01000107 48,090 0
JFOE01000264 47,150 0
JFOE01000253 37,801 0
JFOE01000114 33,064 0
JFOE01000044 22,485 0
JFOE01000263 22,275 0
JFOE01000103 22,088 0
JFOE01000073 21,201 0
JFOE01000148 21,189 0
JFOE01000269 20,869 0
JFOE01000210 18,858 0
JFOE01000318 15,021 0
JFOE01000279 13,999 0
JFOE01000270 13,792 0
JFOE01000189 11,312 0
JFOE01000147 11,142 0
JFOE01000289 10,034 0
JFOE01000297 9,310 0
JFOE01000144 9,279 0
JFOE01000205 8,608 0
JFOE01000267 7,756 0
JFOE01000227 6,683 0
JFOE01000113 6,635 0
JFOE01000127 6,564 0
JFOE01000003 6,456 0
JFOE01000202 5,952 0
JFOE01000045 5,802 0
JFOE01000002 5,656 0
JFOE01000004 5,579 0
JFOE01000265 5,283 0
JFOE01000226 5,222 0
JFOE01000102 4,959 0
JFOE01000268 4,635 0
JFOE01000005 4,372 0
JFOE01000146 4,369 0
JFOE01000192 4,301 0
JFOE01000194 4,109 0
JFOE01000266 4,002 0
JFOE01000019 3,753 0
JFOE01000098 3,416 0
JFOE01000022 3,164 0
JFOE01000225 3,150 0
JFOE01000280 3,020 0
JFOE01000106 3,012 0
JFOE01000143 2,857 0
JFOE01000296 2,802 0
JFOE01000206 2,731 0
JFOE01000104 2,686 0
JFOE01000190 2,665 0
JFOE01000288 2,663 0
JFOE01000294 2,635 0
JFOE01000191 2,599 0
JFOE01000298 2,363 0
JFOE01000122 2,346 0
JFOE01000224 2,060 0
JFOE01000335 1,971 0
JFOE01000197 1,946 0
JFOE01000072 1,699 0
JFOE01000236 1,674 0
JFOE01000119 1,613 0
JFOE01000120 1,582 0
JFOE01000105 1,582 0
JFOE01000193 1,535 0
JFOE01000345 1,354 0
JFOE01000015 1,349 0
JFOE01000047 1,349 0
JFOE01000048 1,326 0
JFOE01000056 1,318 0
JFOE01000295 1,317 0
JFOE01000130 1,211 0
JFOE01000231 1,184 0
JFOE01000012 1,184 0
JFOE01000053 1,146 0
JFOE01000200 1,045 0
JFOE01000173 1,041 0
JFOE01000171 1,033 0
JFOE01000329 1,024 0
JFOE01000131 1,023 0
JFOE01000135 1,017 0
JFOE01000043 991 0
JFOE01000033 962 0
JFOE01000142 961 0
JFOE01000149 947 0
JFOE01000124 941 0
JFOE01000141 931 0
JFOE01000137 916 0
JFOE01000346 898 0
JFOE01000037 876 0
JFOE01000115 875 0
JFOE01000183 866 0
JFOE01000136 852 0
JFOE01000167 831 0
JFOE01000013 826 0
JFOE01000008 825 0
JFOE01000111 818 0
JFOE01000101 814 0
JFOE01000030 800 0
JFOE01000112 799 0
JFOE01000079 791 0
JFOE01000245 784 0
JFOE01000209 777 0
JFOE01000126 734 0
JFOE01000255 718 0
JFOE01000222 694 0
JFOE01000134 685 0
JFOE01000259 681 0
JFOE01000232 675 0
JFOE01000132 660 0
JFOE01000128 649 0
JFOE01000175 638 0
JFOE01000046 636 0
JFOE01000123 631 0
JFOE01000020 609 0
JFOE01000140 602 0
JFOE01000125 587 0
JFOE01000261 581 0
JFOE01000145 580 0
JFOE01000014 569 0
JFOE01000287 569 0
JFOE01000074 556 0
JFOE01000054 549 0
JFOE01000252 544 0
JFOE01000165 542 0
JFOE01000026 540 0
JFOE01000109 536 0
JFOE01000299 533 0
JFOE01000040 529 0
JFOE01000304 523 0
JFOE01000096 520 0
JFOE01000241 518 0
JFOE01000235 518 0
JFOE01000172 517 0
JFOE01000069 516 0
JFOE01000021 513 0
JFOE01000276 510 0
JFOE01000271 499 0
JFOE01000133 499 0
JFOE01000118 494 0
JFOE01000260 492 0
JFOE01000058 491 0
JFOE01000025 482 0
JFOE01000343 469 0
JFOE01000199 469 0
JFOE01000272 467 0
JFOE01000027 458 0
JFOE01000300 456 0
JFOE01000283 450 0
JFOE01000006 450 0
JFOE01000303 449 0
JFOE01000306 446 0
JFOE01000243 433 0
JFOE01000330 432 0
JFOE01000278 431 0
JFOE01000284 429 0
JFOE01000090 423 0
JFOE01000042 421 0
JFOE01000207 420 0
JFOE01000273 419 0
JFOE01000164 419 0
JFOE01000308 415 0
JFOE01000312 414 0
JFOE01000246 413 0
JFOE01000325 413 0
JFOE01000158 408 0
JFOE01000185 407 0
JFOE01000154 400 0
JFOE01000281 399 0
JFOE01000216 392 0
JFOE01000340 391 0
JFOE01000153 386 0
JFOE01000084 384 0
JFOE01000168 383 0
JFOE01000177 383 0
JFOE01000310 374 0
JFOE01000249 372 0
JFOE01000315 370 0
JFOE01000342 370 0
JFOE01000055 369 0
JFOE01000201 367 0
JFOE01000244 365 0
JFOE01000214 365 0
JFOE01000239 364 0
JFOE01000242 363 0
JFOE01000016 360 0
JFOE01000338 359 0
JFOE01000091 357 0
JFOE01000082 354 0
JFOE01000331 353 0
JFOE01000078 353 0
JFOE01000170 349 0
JFOE01000001 337 0
JFOE01000121 336 0
JFOE01000039 334 0
JFOE01000036 330 0
JFOE01000089 327 0
JFOE01000050 327 0
JFOE01000059 326 0
JFOE01000049 326 0
JFOE01000176 325 0
JFOE01000262 324 0
JFOE01000065 323 0
JFOE01000237 319 0
JFOE01000023 318 0
JFOE01000257 318 0
JFOE01000219 317 0
JFOE01000088 315 0
JFOE01000319 315 0
JFOE01000151 314 0
JFOE01000320 313 0
JFOE01000174 311 0
JFOE01000275 311 0
JFOE01000247 310 0
JFOE01000187 308 0
JFOE01000070 307 0
JFOE01000184 307 0
JFOE01000071 306 0
JFOE01000099 306 0
JFOE01000251 306 0
JFOE01000152 305 0
JFOE01000256 302 0
JFOE01000221 301 0
JFOE01000309 300 0
JFOE01000313 300 0
JFOE01000095 299 0
JFOE01000311 298 0
JFOE01000159 296 0
JFOE01000010 296 0
JFOE01000062 294 0
JFOE01000061 294 0
JFOE01000100 293 0
JFOE01000196 292 0
JFOE01000129 290 0
JFOE01000334 289 0
JFOE01000166 288 0
JFOE01000215 287 0
JFOE01000041 287 0
JFOE01000203 286 0
JFOE01000179 285 0
JFOE01000188 285 0
JFOE01000092 284 0
JFOE01000258 283 0
JFOE01000034 278 0
JFOE01000240 277 0
JFOE01000080 277 0
JFOE01000169 277 0
JFOE01000051 273 0
JFOE01000217 273 0
JFOE01000011 272 0
JFOE01000337 271 0
JFOE01000081 270 0
JFOE01000108 269 0
JFOE01000223 268 0
JFOE01000186 265 0
JFOE01000233 265 0
JFOE01000181 263 0
JFOE01000220 261 0
JFOE01000344 261 0
JFOE01000323 258 0
JFOE01000067 258 0
JFOE01000274 258 0
JFOE01000254 257 0
JFOE01000024 257 0
JFOE01000314 256 0
JFOE01000110 256 0
JFOE01000198 255 0
JFOE01000282 255 0
JFOE01000291 254 0
JFOE01000211 254 0
JFOE01000238 253 0
JFOE01000160 252 0
JFOE01000029 251 0
JFOE01000178 250 0
JFOE01000156 250 0
JFOE01000163 249 0
JFOE01000250 248 0
JFOE01000213 248 0
JFOE01000248 247 0
JFOE01000035 247 0
JFOE01000116 247 0
JFOE01000017 246 0
JFOE01000031 243 0
JFOE01000063 242 0
JFOE01000028 241 0
JFOE01000182 240 0
JFOE01000322 239 0
JFOE01000066 239 0
JFOE01000321 237 0
JFOE01000341 237 0
JFOE01000155 237 0
JFOE01000290 232 0
JFOE01000138 232 0
JFOE01000083 231 0
JFOE01000332 230 0
JFOE01000009 229 0
JFOE01000086 229 0
JFOE01000060 229 0
JFOE01000285 228 0
JFOE01000161 228 0
JFOE01000208 227 0
JFOE01000093 227 0
JFOE01000336 226 0
JFOE01000286 226 0
JFOE01000087 226 0
JFOE01000301 226 0
JFOE01000277 224 0
JFOE01000007 223 0
JFOE01000195 223 0
JFOE01000018 220 0
JFOE01000218 218 0
JFOE01000064 218 0
JFOE01000075 217 0
JFOE01000204 217 0
JFOE01000324 217 0
JFOE01000302 216 0
JFOE01000305 216 0
JFOE01000293 216 0
JFOE01000229 215 0
JFOE01000180 214 0
JFOE01000162 214 0
JFOE01000326 213 0
JFOE01000292 213 0
JFOE01000085 212 0
JFOE01000234 212 0
JFOE01000057 211 0
JFOE01000117 211 0
JFOE01000307 208 0
JFOE01000327 208 0
JFOE01000228 208 0
JFOE01000212 207 0
JFOE01000316 207 0
JFOE01000157 207 0
JFOE01000230 207 0
JFOE01000032 206 0
JFOE01000097 204 0
JFOE01000333 204 0
JFOE01000094 204 0
JFOE01000328 203 0
JFOE01000317 201 0
JFOE01000076 201 0
JFOE01000038 201 0
JFOE01000339 200 0
JFOE01000150 200 0
JFOE01000068 200 0
JFOE01000077 200 0
Total 895,440 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634595.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634595.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634595.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634595.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634595.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634595.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634595.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634595.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634595.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634595.1/genes/interpro.txt (File format)

MicrobeBase