cyanobase » Prochlorococcus sp. scB245a_521N3

Prochlorococcus sp. scB245a_521N3

Summary

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Data source name GCA_000634575.1
Full name Prochlorococcus sp. scB245a_521N3 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFOB01000282 77,057 0
JFOB01000423 50,770 0
JFOB01000283 27,693 0
JFOB01000285 25,049 0
JFOB01000293 23,093 0
JFOB01000033 22,306 0
JFOB01000018 21,218 0
JFOB01000228 19,085 0
JFOB01000053 16,267 0
JFOB01000168 14,931 0
JFOB01000297 10,569 0
JFOB01000308 10,263 0
JFOB01000061 8,656 0
JFOB01000059 8,511 0
JFOB01000392 6,473 0
JFOB01000284 5,841 0
JFOB01000162 5,158 0
JFOB01000355 5,111 0
JFOB01000057 4,947 0
JFOB01000296 4,689 0
JFOB01000004 4,572 0
JFOB01000001 4,473 0
JFOB01000294 4,316 0
JFOB01000165 4,301 0
JFOB01000089 3,999 0
JFOB01000003 3,957 0
JFOB01000349 3,803 0
JFOB01000050 3,659 0
JFOB01000016 3,346 0
JFOB01000344 3,225 0
JFOB01000163 3,025 0
JFOB01000350 2,986 0
JFOB01000058 2,824 0
JFOB01000405 2,653 0
JFOB01000227 2,607 0
JFOB01000226 2,521 0
JFOB01000390 2,470 0
JFOB01000087 2,331 0
JFOB01000229 2,328 0
JFOB01000224 2,308 0
JFOB01000029 2,162 0
JFOB01000160 2,124 0
JFOB01000091 2,060 0
JFOB01000406 2,034 0
JFOB01000062 1,962 0
JFOB01000030 1,959 0
JFOB01000354 1,776 0
JFOB01000017 1,724 0
JFOB01000048 1,698 0
JFOB01000060 1,532 0
JFOB01000353 1,522 0
JFOB01000309 1,486 0
JFOB01000026 1,460 0
JFOB01000164 1,440 0
JFOB01000408 1,418 0
JFOB01000052 1,304 0
JFOB01000055 1,288 0
JFOB01000411 1,286 0
JFOB01000434 1,284 0
JFOB01000215 1,270 0
JFOB01000090 1,269 0
JFOB01000214 1,208 0
JFOB01000046 1,189 0
JFOB01000049 1,187 0
JFOB01000045 1,178 0
JFOB01000291 1,137 0
JFOB01000183 1,108 0
JFOB01000391 1,106 0
JFOB01000195 1,100 0
JFOB01000027 1,075 0
JFOB01000082 1,074 0
JFOB01000109 1,037 0
JFOB01000014 1,004 0
JFOB01000386 1,002 0
JFOB01000137 1,001 0
JFOB01000147 953 0
JFOB01000002 929 0
JFOB01000025 929 0
JFOB01000028 923 0
JFOB01000139 918 0
JFOB01000256 901 0
JFOB01000404 894 0
JFOB01000345 893 0
JFOB01000438 890 0
JFOB01000295 884 0
JFOB01000217 869 0
JFOB01000407 856 0
JFOB01000213 820 0
JFOB01000031 818 0
JFOB01000197 812 0
JFOB01000306 810 0
JFOB01000365 802 0
JFOB01000359 783 0
JFOB01000290 770 0
JFOB01000006 769 0
JFOB01000347 765 0
JFOB01000086 752 0
JFOB01000176 748 0
JFOB01000389 732 0
JFOB01000107 727 0
JFOB01000157 724 0
JFOB01000221 719 0
JFOB01000307 709 0
JFOB01000111 709 0
JFOB01000372 703 0
JFOB01000351 702 0
JFOB01000138 699 0
JFOB01000190 698 0
JFOB01000373 692 0
JFOB01000208 681 0
JFOB01000440 680 0
JFOB01000167 677 0
JFOB01000420 661 0
JFOB01000313 654 0
JFOB01000125 651 0
JFOB01000220 643 0
JFOB01000172 640 0
JFOB01000356 640 0
JFOB01000063 639 0
JFOB01000085 637 0
JFOB01000054 635 0
JFOB01000414 633 0
JFOB01000193 617 0
JFOB01000037 614 0
JFOB01000366 606 0
JFOB01000051 602 0
JFOB01000142 601 0
JFOB01000292 592 0
JFOB01000231 591 0
JFOB01000255 588 0
JFOB01000174 583 0
JFOB01000093 567 0
JFOB01000400 562 0
JFOB01000191 562 0
JFOB01000069 560 0
JFOB01000124 559 0
JFOB01000312 554 0
JFOB01000310 552 0
JFOB01000175 550 0
JFOB01000023 547 0
JFOB01000376 534 0
JFOB01000222 532 0
JFOB01000064 531 0
JFOB01000102 530 0
JFOB01000035 527 0
JFOB01000393 526 0
JFOB01000264 526 0
JFOB01000343 519 0
JFOB01000114 519 0
JFOB01000305 514 0
JFOB01000205 512 0
JFOB01000385 508 0
JFOB01000435 507 0
JFOB01000072 502 0
JFOB01000268 497 0
JFOB01000112 496 0
JFOB01000199 496 0
JFOB01000169 496 0
JFOB01000311 495 0
JFOB01000230 491 0
JFOB01000166 490 0
JFOB01000043 487 0
JFOB01000032 485 0
JFOB01000315 480 0
JFOB01000332 476 0
JFOB01000225 476 0
JFOB01000099 471 0
JFOB01000128 466 0
JFOB01000144 454 0
JFOB01000024 449 0
JFOB01000116 448 0
JFOB01000367 446 0
JFOB01000219 444 0
JFOB01000358 444 0
JFOB01000156 443 0
JFOB01000056 442 0
JFOB01000371 441 0
JFOB01000436 440 0
JFOB01000271 423 0
JFOB01000251 420 0
JFOB01000412 418 0
JFOB01000397 413 0
JFOB01000135 405 0
JFOB01000203 405 0
JFOB01000302 402 0
JFOB01000280 402 0
JFOB01000076 402 0
JFOB01000323 399 0
JFOB01000011 398 0
JFOB01000333 396 0
JFOB01000370 393 0
JFOB01000424 391 0
JFOB01000325 391 0
JFOB01000206 389 0
JFOB01000047 386 0
JFOB01000005 386 0
JFOB01000401 383 0
JFOB01000097 383 0
JFOB01000387 382 0
JFOB01000103 381 0
JFOB01000202 379 0
JFOB01000398 377 0
JFOB01000374 373 0
JFOB01000286 372 0
JFOB01000363 372 0
JFOB01000234 371 0
JFOB01000136 369 0
JFOB01000148 369 0
JFOB01000088 368 0
JFOB01000145 368 0
JFOB01000304 367 0
JFOB01000108 367 0
JFOB01000079 367 0
JFOB01000180 365 0
JFOB01000324 364 0
JFOB01000081 363 0
JFOB01000034 362 0
JFOB01000237 361 0
JFOB01000126 360 0
JFOB01000375 359 0
JFOB01000194 357 0
JFOB01000437 356 0
JFOB01000334 356 0
JFOB01000241 354 0
JFOB01000178 351 0
JFOB01000182 351 0
JFOB01000235 347 0
JFOB01000223 346 0
JFOB01000233 345 0
JFOB01000188 343 0
JFOB01000267 343 0
JFOB01000236 342 0
JFOB01000100 341 0
JFOB01000278 341 0
JFOB01000080 339 0
JFOB01000132 338 0
JFOB01000429 336 0
JFOB01000211 335 0
JFOB01000177 334 0
JFOB01000155 333 0
JFOB01000399 333 0
JFOB01000346 332 0
JFOB01000357 329 0
JFOB01000322 329 0
JFOB01000209 329 0
JFOB01000101 328 0
JFOB01000154 328 0
JFOB01000123 326 0
JFOB01000247 325 0
JFOB01000340 325 0
JFOB01000151 323 0
JFOB01000250 321 0
JFOB01000413 320 0
JFOB01000171 319 0
JFOB01000170 319 0
JFOB01000275 318 0
JFOB01000179 315 0
JFOB01000279 314 0
JFOB01000319 312 0
JFOB01000134 312 0
JFOB01000015 310 0
JFOB01000335 309 0
JFOB01000303 307 0
JFOB01000092 307 0
JFOB01000065 305 0
JFOB01000201 304 0
JFOB01000244 303 0
JFOB01000273 303 0
JFOB01000121 302 0
JFOB01000270 302 0
JFOB01000364 301 0
JFOB01000119 299 0
JFOB01000249 299 0
JFOB01000173 298 0
JFOB01000261 298 0
JFOB01000246 294 0
JFOB01000192 293 0
JFOB01000331 293 0
JFOB01000071 292 0
JFOB01000141 292 0
JFOB01000384 291 0
JFOB01000352 291 0
JFOB01000238 290 0
JFOB01000074 289 0
JFOB01000318 289 0
JFOB01000348 288 0
JFOB01000416 287 0
JFOB01000362 287 0
JFOB01000253 287 0
JFOB01000314 286 0
JFOB01000104 285 0
JFOB01000277 285 0
JFOB01000328 284 0
JFOB01000122 284 0
JFOB01000380 284 0
JFOB01000269 284 0
JFOB01000161 282 0
JFOB01000248 281 0
JFOB01000298 280 0
JFOB01000038 279 0
JFOB01000008 278 0
JFOB01000288 278 0
JFOB01000098 277 0
JFOB01000320 276 0
JFOB01000140 275 0
JFOB01000149 274 0
JFOB01000240 273 0
JFOB01000410 272 0
JFOB01000403 272 0
JFOB01000216 272 0
JFOB01000409 271 0
JFOB01000187 270 0
JFOB01000075 269 0
JFOB01000094 268 0
JFOB01000127 268 0
JFOB01000118 267 0
JFOB01000239 266 0
JFOB01000218 266 0
JFOB01000329 266 0
JFOB01000210 266 0
JFOB01000068 265 0
JFOB01000186 265 0
JFOB01000266 262 0
JFOB01000146 262 0
JFOB01000426 261 0
JFOB01000044 261 0
JFOB01000439 261 0
JFOB01000067 261 0
JFOB01000158 259 0
JFOB01000301 259 0
JFOB01000430 258 0
JFOB01000418 258 0
JFOB01000300 258 0
JFOB01000422 257 0
JFOB01000012 256 0
JFOB01000096 254 0
JFOB01000105 252 0
JFOB01000252 252 0
JFOB01000360 251 0
JFOB01000207 250 0
JFOB01000115 249 0
JFOB01000009 248 0
JFOB01000245 248 0
JFOB01000066 246 0
JFOB01000020 246 0
JFOB01000402 245 0
JFOB01000339 244 0
JFOB01000077 244 0
JFOB01000198 244 0
JFOB01000276 244 0
JFOB01000274 243 0
JFOB01000336 242 0
JFOB01000265 242 0
JFOB01000382 241 0
JFOB01000330 240 0
JFOB01000083 239 0
JFOB01000368 238 0
JFOB01000022 238 0
JFOB01000200 238 0
JFOB01000383 236 0
JFOB01000321 236 0
JFOB01000106 236 0
JFOB01000441 235 0
JFOB01000342 235 0
JFOB01000243 234 0
JFOB01000326 233 0
JFOB01000388 233 0
JFOB01000338 233 0
JFOB01000289 232 0
JFOB01000131 232 0
JFOB01000042 232 0
JFOB01000073 232 0
JFOB01000263 231 0
JFOB01000070 231 0
JFOB01000316 230 0
JFOB01000078 229 0
JFOB01000431 228 0
JFOB01000013 228 0
JFOB01000337 227 0
JFOB01000394 226 0
JFOB01000341 224 0
JFOB01000395 224 0
JFOB01000143 222 0
JFOB01000196 220 0
JFOB01000133 220 0
JFOB01000262 220 0
JFOB01000113 219 0
JFOB01000129 219 0
JFOB01000432 219 0
JFOB01000379 218 0
JFOB01000159 218 0
JFOB01000254 218 0
JFOB01000272 218 0
JFOB01000287 217 0
JFOB01000039 217 0
JFOB01000204 216 0
JFOB01000421 216 0
JFOB01000260 216 0
JFOB01000258 216 0
JFOB01000152 216 0
JFOB01000281 216 0
JFOB01000010 215 0
JFOB01000419 215 0
JFOB01000130 214 0
JFOB01000095 213 0
JFOB01000117 213 0
JFOB01000327 213 0
JFOB01000257 212 0
JFOB01000184 212 0
JFOB01000181 212 0
JFOB01000110 211 0
JFOB01000378 210 0
JFOB01000036 210 0
JFOB01000361 210 0
JFOB01000442 210 0
JFOB01000232 209 0
JFOB01000425 209 0
JFOB01000417 208 0
JFOB01000019 208 0
JFOB01000212 208 0
JFOB01000021 207 0
JFOB01000369 207 0
JFOB01000259 206 0
JFOB01000242 206 0
JFOB01000415 206 0
JFOB01000041 206 0
JFOB01000040 206 0
JFOB01000317 206 0
JFOB01000433 205 0
JFOB01000120 205 0
JFOB01000150 205 0
JFOB01000299 203 0
JFOB01000396 203 0
JFOB01000428 202 0
JFOB01000007 202 0
JFOB01000189 202 0
JFOB01000381 201 0
JFOB01000185 201 0
JFOB01000427 200 0
JFOB01000084 200 0
JFOB01000377 200 0
JFOB01000153 200 0
Total 621,899 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634575.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634575.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634575.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634575.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634575.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634575.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634575.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634575.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634575.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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