cyanobase » Prochlorococcus sp. scB245a_521A19

Prochlorococcus sp. scB245a_521A19

Summary

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Data source name GCA_000634555.2
Full name Prochlorococcus sp. scB245a_521A19 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNW01000001 154,745 0
JFNW01000109 120,575 0
JFNW01000101 95,130 0
JFNW01000141 63,969 0
JFNW01000280 57,415 0
JFNW01000098 56,191 0
JFNW01000041 50,640 0
JFNW01000295 33,097 0
JFNW01000168 30,539 0
JFNW01000177 27,519 0
JFNW01000030 26,569 0
JFNW01000209 25,008 0
JFNW01000097 22,171 0
JFNW01000287 21,363 0
JFNW01000099 19,582 0
JFNW01000121 18,970 0
JFNW01000100 15,895 0
JFNW01000110 14,695 0
JFNW01000253 12,921 0
JFNW01000157 12,708 0
JFNW01000003 10,449 0
JFNW01000039 10,081 0
JFNW01000288 8,628 0
JFNW01000122 8,324 0
JFNW01000149 7,590 0
JFNW01000027 6,934 0
JFNW01000279 6,284 0
JFNW01000094 5,789 0
JFNW01000091 5,717 0
JFNW01000156 5,716 0
JFNW01000289 5,436 0
JFNW01000023 4,974 0
JFNW01000042 4,583 0
JFNW01000225 4,161 0
JFNW01000004 4,019 0
JFNW01000029 3,821 0
JFNW01000111 3,799 0
JFNW01000092 3,710 0
JFNW01000095 3,316 0
JFNW01000040 3,250 0
JFNW01000252 3,078 0
JFNW01000108 3,015 0
JFNW01000296 2,990 0
JFNW01000263 2,528 0
JFNW01000150 2,507 0
JFNW01000169 2,431 0
JFNW01000226 2,106 0
JFNW01000293 2,099 0
JFNW01000164 1,973 0
JFNW01000219 1,855 0
JFNW01000158 1,826 0
JFNW01000284 1,819 0
JFNW01000090 1,795 0
JFNW01000015 1,786 0
JFNW01000002 1,782 0
JFNW01000088 1,561 0
JFNW01000165 1,526 0
JFNW01000208 1,376 0
JFNW01000022 1,367 0
JFNW01000176 1,328 0
JFNW01000132 1,325 0
JFNW01000294 1,302 0
JFNW01000143 1,274 0
JFNW01000140 1,245 0
JFNW01000227 1,242 0
JFNW01000043 1,215 0
JFNW01000175 1,207 0
JFNW01000005 1,192 0
JFNW01000272 1,167 0
JFNW01000224 1,167 0
JFNW01000155 1,166 0
JFNW01000028 1,159 0
JFNW01000229 1,143 0
JFNW01000009 1,065 0
JFNW01000285 1,045 0
JFNW01000222 1,009 0
JFNW01000007 987 0
JFNW01000299 984 0
JFNW01000046 981 0
JFNW01000223 978 0
JFNW01000082 974 0
JFNW01000006 967 0
JFNW01000093 939 0
JFNW01000152 923 0
JFNW01000210 922 0
JFNW01000211 908 0
JFNW01000021 892 0
JFNW01000194 882 0
JFNW01000049 881 0
JFNW01000311 872 0
JFNW01000291 872 0
JFNW01000025 869 0
JFNW01000102 856 0
JFNW01000213 826 0
JFNW01000215 821 0
JFNW01000251 818 0
JFNW01000050 810 0
JFNW01000310 808 0
JFNW01000075 800 0
JFNW01000178 794 0
JFNW01000064 792 0
JFNW01000103 785 0
JFNW01000197 765 0
JFNW01000195 765 0
JFNW01000196 765 0
JFNW01000245 762 0
JFNW01000044 749 0
JFNW01000230 726 0
JFNW01000138 697 0
JFNW01000151 695 0
JFNW01000104 695 0
JFNW01000218 690 0
JFNW01000083 683 0
JFNW01000212 665 0
JFNW01000065 656 0
JFNW01000089 654 0
JFNW01000008 648 0
JFNW01000273 640 0
JFNW01000142 638 0
JFNW01000270 636 0
JFNW01000237 620 0
JFNW01000137 614 0
JFNW01000254 613 0
JFNW01000173 602 0
JFNW01000217 600 0
JFNW01000031 587 0
JFNW01000216 576 0
JFNW01000312 569 0
JFNW01000136 554 0
JFNW01000241 552 0
JFNW01000268 550 0
JFNW01000275 548 0
JFNW01000153 537 0
JFNW01000096 535 0
JFNW01000062 535 0
JFNW01000067 533 0
JFNW01000179 530 0
JFNW01000163 517 0
JFNW01000144 514 0
JFNW01000017 503 0
JFNW01000128 491 0
JFNW01000200 483 0
JFNW01000282 477 0
JFNW01000233 469 0
JFNW01000072 469 0
JFNW01000283 465 0
JFNW01000228 457 0
JFNW01000174 449 0
JFNW01000134 443 0
JFNW01000301 442 0
JFNW01000257 442 0
JFNW01000314 439 0
JFNW01000024 439 0
JFNW01000261 438 0
JFNW01000240 433 0
JFNW01000133 431 0
JFNW01000026 426 0
JFNW01000246 424 0
JFNW01000076 421 0
JFNW01000106 420 0
JFNW01000053 419 0
JFNW01000191 419 0
JFNW01000231 417 0
JFNW01000318 413 0
JFNW01000063 412 0
JFNW01000069 411 0
JFNW01000129 405 0
JFNW01000166 402 0
JFNW01000244 401 0
JFNW01000172 400 0
JFNW01000183 399 0
JFNW01000048 398 0
JFNW01000243 398 0
JFNW01000278 398 0
JFNW01000321 396 0
JFNW01000061 396 0
JFNW01000051 392 0
JFNW01000130 392 0
JFNW01000135 391 0
JFNW01000116 391 0
JFNW01000070 390 0
JFNW01000269 387 0
JFNW01000078 387 0
JFNW01000037 384 0
JFNW01000107 381 0
JFNW01000019 377 0
JFNW01000146 377 0
JFNW01000206 375 0
JFNW01000182 375 0
JFNW01000313 371 0
JFNW01000032 369 0
JFNW01000203 368 0
JFNW01000292 368 0
JFNW01000033 367 0
JFNW01000187 362 0
JFNW01000198 357 0
JFNW01000045 357 0
JFNW01000258 354 0
JFNW01000113 354 0
JFNW01000276 351 0
JFNW01000071 346 0
JFNW01000085 345 0
JFNW01000018 340 0
JFNW01000242 339 0
JFNW01000317 336 0
JFNW01000087 336 0
JFNW01000204 335 0
JFNW01000180 330 0
JFNW01000267 330 0
JFNW01000255 328 0
JFNW01000220 328 0
JFNW01000012 325 0
JFNW01000115 325 0
JFNW01000185 324 0
JFNW01000290 321 0
JFNW01000074 319 0
JFNW01000147 319 0
JFNW01000188 317 0
JFNW01000084 317 0
JFNW01000316 311 0
JFNW01000184 311 0
JFNW01000205 308 0
JFNW01000073 308 0
JFNW01000112 308 0
JFNW01000038 307 0
JFNW01000330 306 0
JFNW01000059 304 0
JFNW01000326 303 0
JFNW01000325 303 0
JFNW01000331 302 0
JFNW01000036 299 0
JFNW01000302 296 0
JFNW01000271 294 0
JFNW01000105 293 0
JFNW01000306 292 0
JFNW01000277 292 0
JFNW01000013 290 0
JFNW01000034 289 0
JFNW01000320 287 0
JFNW01000238 287 0
JFNW01000201 285 0
JFNW01000079 285 0
JFNW01000161 283 0
JFNW01000052 283 0
JFNW01000236 281 0
JFNW01000056 281 0
JFNW01000248 275 0
JFNW01000234 274 0
JFNW01000262 271 0
JFNW01000300 269 0
JFNW01000303 268 0
JFNW01000315 267 0
JFNW01000086 267 0
JFNW01000057 266 0
JFNW01000260 266 0
JFNW01000297 259 0
JFNW01000202 259 0
JFNW01000192 258 0
JFNW01000139 257 0
JFNW01000054 255 0
JFNW01000298 255 0
JFNW01000250 252 0
JFNW01000125 249 0
JFNW01000035 248 0
JFNW01000286 246 0
JFNW01000119 243 0
JFNW01000118 243 0
JFNW01000058 242 0
JFNW01000193 239 0
JFNW01000319 238 0
JFNW01000126 237 0
JFNW01000323 236 0
JFNW01000328 235 0
JFNW01000324 235 0
JFNW01000066 235 0
JFNW01000266 234 0
JFNW01000120 234 0
JFNW01000014 233 0
JFNW01000131 233 0
JFNW01000068 232 0
JFNW01000080 232 0
JFNW01000154 231 0
JFNW01000264 231 0
JFNW01000010 229 0
JFNW01000322 229 0
JFNW01000077 227 0
JFNW01000170 226 0
JFNW01000124 226 0
JFNW01000247 226 0
JFNW01000171 225 0
JFNW01000256 224 0
JFNW01000167 224 0
JFNW01000327 224 0
JFNW01000207 222 0
JFNW01000189 222 0
JFNW01000160 221 0
JFNW01000081 221 0
JFNW01000114 221 0
JFNW01000265 220 0
JFNW01000304 219 0
JFNW01000259 219 0
JFNW01000190 218 0
JFNW01000235 217 0
JFNW01000162 216 0
JFNW01000232 216 0
JFNW01000016 215 0
JFNW01000249 212 0
JFNW01000047 212 0
JFNW01000199 211 0
JFNW01000060 211 0
JFNW01000308 210 0
JFNW01000221 209 0
JFNW01000309 209 0
JFNW01000127 209 0
JFNW01000214 208 0
JFNW01000123 208 0
JFNW01000117 207 0
JFNW01000239 207 0
JFNW01000181 207 0
JFNW01000186 206 0
JFNW01000148 205 0
JFNW01000055 205 0
JFNW01000307 205 0
JFNW01000159 204 0
JFNW01000145 204 0
JFNW01000281 202 0
JFNW01000011 201 0
JFNW01000020 201 0
JFNW01000274 200 0
JFNW01000305 200 0
Total 1,160,544 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634555.2

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634555.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634555.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634555.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634555.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634555.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634555.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634555.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634555.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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