cyanobase » Prochlorococcus sp. scB245a_520K10

Prochlorococcus sp. scB245a_520K10

Summary

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Data source name GCA_000634515.1
Full name Prochlorococcus sp. scB245a_520K10 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNU01000202 402,403 0
JFNU01000004 276,091 0
JFNU01000005 163,632 0
JFNU01000169 118,991 0
JFNU01000139 83,156 0
JFNU01000179 58,963 0
JFNU01000151 56,208 0
JFNU01000178 22,925 0
JFNU01000145 20,532 0
JFNU01000101 15,117 0
JFNU01000049 14,461 0
JFNU01000102 12,669 0
JFNU01000170 10,238 0
JFNU01000176 9,150 0
JFNU01000141 8,015 0
JFNU01000223 7,750 0
JFNU01000094 7,746 0
JFNU01000138 7,725 0
JFNU01000142 6,765 0
JFNU01000200 6,047 0
JFNU01000002 5,853 0
JFNU01000003 5,309 0
JFNU01000103 4,508 0
JFNU01000077 4,388 0
JFNU01000001 3,153 0
JFNU01000040 3,073 0
JFNU01000035 2,861 0
JFNU01000129 2,712 0
JFNU01000152 2,620 0
JFNU01000171 2,539 0
JFNU01000046 2,329 0
JFNU01000201 2,239 0
JFNU01000199 2,160 0
JFNU01000214 1,947 0
JFNU01000081 1,930 0
JFNU01000062 1,866 0
JFNU01000073 1,863 0
JFNU01000235 1,731 0
JFNU01000063 1,700 0
JFNU01000037 1,620 0
JFNU01000177 1,601 0
JFNU01000082 1,447 0
JFNU01000095 1,435 0
JFNU01000133 1,376 0
JFNU01000067 1,278 0
JFNU01000163 1,211 0
JFNU01000180 1,179 0
JFNU01000052 1,123 0
JFNU01000091 1,099 0
JFNU01000150 1,098 0
JFNU01000074 1,084 0
JFNU01000215 1,023 0
JFNU01000195 939 0
JFNU01000108 929 0
JFNU01000140 920 0
JFNU01000098 900 0
JFNU01000092 869 0
JFNU01000096 855 0
JFNU01000205 841 0
JFNU01000134 835 0
JFNU01000079 832 0
JFNU01000160 813 0
JFNU01000219 794 0
JFNU01000137 793 0
JFNU01000194 785 0
JFNU01000119 785 0
JFNU01000032 761 0
JFNU01000033 746 0
JFNU01000041 739 0
JFNU01000236 736 0
JFNU01000039 726 0
JFNU01000053 724 0
JFNU01000056 721 0
JFNU01000125 716 0
JFNU01000181 697 0
JFNU01000023 682 0
JFNU01000051 677 0
JFNU01000197 662 0
JFNU01000048 658 0
JFNU01000034 654 0
JFNU01000107 648 0
JFNU01000050 617 0
JFNU01000011 570 0
JFNU01000127 568 0
JFNU01000075 567 0
JFNU01000188 558 0
JFNU01000186 550 0
JFNU01000071 548 0
JFNU01000228 537 0
JFNU01000007 530 0
JFNU01000187 528 0
JFNU01000019 528 0
JFNU01000220 524 0
JFNU01000184 515 0
JFNU01000144 503 0
JFNU01000217 500 0
JFNU01000120 499 0
JFNU01000078 497 0
JFNU01000149 481 0
JFNU01000047 480 0
JFNU01000143 478 0
JFNU01000146 478 0
JFNU01000068 476 0
JFNU01000066 472 0
JFNU01000061 461 0
JFNU01000130 450 0
JFNU01000099 444 0
JFNU01000110 444 0
JFNU01000157 442 0
JFNU01000229 442 0
JFNU01000159 441 0
JFNU01000113 439 0
JFNU01000027 426 0
JFNU01000044 424 0
JFNU01000185 424 0
JFNU01000106 422 0
JFNU01000153 415 0
JFNU01000009 415 0
JFNU01000080 408 0
JFNU01000018 407 0
JFNU01000237 407 0
JFNU01000174 402 0
JFNU01000117 400 0
JFNU01000059 398 0
JFNU01000164 392 0
JFNU01000165 388 0
JFNU01000086 384 0
JFNU01000193 375 0
JFNU01000072 370 0
JFNU01000100 365 0
JFNU01000136 364 0
JFNU01000162 363 0
JFNU01000089 357 0
JFNU01000155 355 0
JFNU01000112 349 0
JFNU01000109 348 0
JFNU01000070 338 0
JFNU01000216 338 0
JFNU01000172 337 0
JFNU01000122 333 0
JFNU01000105 328 0
JFNU01000028 327 0
JFNU01000182 326 0
JFNU01000060 319 0
JFNU01000222 317 0
JFNU01000128 317 0
JFNU01000204 317 0
JFNU01000010 315 0
JFNU01000173 314 0
JFNU01000069 314 0
JFNU01000168 314 0
JFNU01000221 312 0
JFNU01000076 309 0
JFNU01000234 308 0
JFNU01000090 307 0
JFNU01000104 300 0
JFNU01000085 299 0
JFNU01000207 298 0
JFNU01000006 298 0
JFNU01000132 298 0
JFNU01000093 296 0
JFNU01000013 295 0
JFNU01000057 294 0
JFNU01000008 294 0
JFNU01000211 293 0
JFNU01000024 293 0
JFNU01000232 292 0
JFNU01000209 291 0
JFNU01000083 289 0
JFNU01000043 282 0
JFNU01000121 282 0
JFNU01000065 280 0
JFNU01000038 279 0
JFNU01000208 279 0
JFNU01000084 278 0
JFNU01000166 277 0
JFNU01000147 276 0
JFNU01000230 275 0
JFNU01000123 274 0
JFNU01000021 273 0
JFNU01000156 271 0
JFNU01000198 270 0
JFNU01000088 270 0
JFNU01000218 269 0
JFNU01000058 265 0
JFNU01000118 264 0
JFNU01000226 262 0
JFNU01000045 261 0
JFNU01000175 261 0
JFNU01000191 257 0
JFNU01000030 256 0
JFNU01000114 255 0
JFNU01000192 249 0
JFNU01000231 249 0
JFNU01000097 247 0
JFNU01000115 243 0
JFNU01000126 242 0
JFNU01000206 242 0
JFNU01000135 241 0
JFNU01000036 239 0
JFNU01000015 238 0
JFNU01000154 236 0
JFNU01000017 236 0
JFNU01000196 233 0
JFNU01000161 232 0
JFNU01000087 230 0
JFNU01000054 228 0
JFNU01000042 227 0
JFNU01000167 224 0
JFNU01000190 222 0
JFNU01000203 221 0
JFNU01000116 219 0
JFNU01000064 219 0
JFNU01000025 218 0
JFNU01000225 218 0
JFNU01000029 216 0
JFNU01000210 216 0
JFNU01000183 216 0
JFNU01000233 210 0
JFNU01000124 209 0
JFNU01000148 208 0
JFNU01000227 208 0
JFNU01000213 207 0
JFNU01000189 206 0
JFNU01000016 206 0
JFNU01000022 206 0
JFNU01000055 205 0
JFNU01000131 204 0
JFNU01000026 204 0
JFNU01000020 204 0
JFNU01000111 204 0
JFNU01000031 203 0
JFNU01000224 203 0
JFNU01000012 202 0
JFNU01000212 201 0
JFNU01000014 200 0
JFNU01000158 200 0
Total 1,453,628 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634515.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634515.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634515.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634515.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634515.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634515.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634515.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634515.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634515.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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