cyanobase » Prochlorococcus sp. scB245a_519O21

Prochlorococcus sp. scB245a_519O21

Summary

? | +/- | Top
Data source name GCA_000634455.1
Full name Prochlorococcus sp. scB245a_519O21 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFNP01000170 273,894 0
JFNP01000005 180,954 0
JFNP01000011 157,246 0
JFNP01000044 108,576 0
JFNP01000001 91,999 0
JFNP01000083 88,638 0
JFNP01000122 59,470 0
JFNP01000008 39,947 0
JFNP01000010 33,678 0
JFNP01000006 30,222 0
JFNP01000111 26,946 0
JFNP01000021 19,747 0
JFNP01000009 13,139 0
JFNP01000169 8,631 0
JFNP01000045 7,357 0
JFNP01000002 6,906 0
JFNP01000046 6,116 0
JFNP01000043 5,705 0
JFNP01000052 4,646 0
JFNP01000106 4,162 0
JFNP01000149 2,861 0
JFNP01000119 2,658 0
JFNP01000109 2,508 0
JFNP01000110 2,248 0
JFNP01000125 2,027 0
JFNP01000148 1,850 0
JFNP01000150 1,750 0
JFNP01000124 1,740 0
JFNP01000131 1,674 0
JFNP01000158 1,483 0
JFNP01000014 1,432 0
JFNP01000161 1,407 0
JFNP01000042 1,398 0
JFNP01000048 1,298 0
JFNP01000144 1,297 0
JFNP01000147 1,199 0
JFNP01000041 1,185 0
JFNP01000081 1,140 0
JFNP01000073 1,137 0
JFNP01000155 1,088 0
JFNP01000120 1,087 0
JFNP01000153 1,085 0
JFNP01000051 1,065 0
JFNP01000078 945 0
JFNP01000007 917 0
JFNP01000152 866 0
JFNP01000080 859 0
JFNP01000126 815 0
JFNP01000127 803 0
JFNP01000185 782 0
JFNP01000163 762 0
JFNP01000049 757 0
JFNP01000004 746 0
JFNP01000142 718 0
JFNP01000071 702 0
JFNP01000164 690 0
JFNP01000113 677 0
JFNP01000037 660 0
JFNP01000015 651 0
JFNP01000047 651 0
JFNP01000022 635 0
JFNP01000159 633 0
JFNP01000123 603 0
JFNP01000039 602 0
JFNP01000115 601 0
JFNP01000128 586 0
JFNP01000190 582 0
JFNP01000174 566 0
JFNP01000079 566 0
JFNP01000076 563 0
JFNP01000202 554 0
JFNP01000082 552 0
JFNP01000162 549 0
JFNP01000072 532 0
JFNP01000140 520 0
JFNP01000165 509 0
JFNP01000184 508 0
JFNP01000157 504 0
JFNP01000166 496 0
JFNP01000066 479 0
JFNP01000121 476 0
JFNP01000203 466 0
JFNP01000013 450 0
JFNP01000160 449 0
JFNP01000129 447 0
JFNP01000173 441 0
JFNP01000016 425 0
JFNP01000136 420 0
JFNP01000050 418 0
JFNP01000167 415 0
JFNP01000145 412 0
JFNP01000130 404 0
JFNP01000033 402 0
JFNP01000154 400 0
JFNP01000034 393 0
JFNP01000040 377 0
JFNP01000143 370 0
JFNP01000205 365 0
JFNP01000114 365 0
JFNP01000151 363 0
JFNP01000069 362 0
JFNP01000097 354 0
JFNP01000200 352 0
JFNP01000090 351 0
JFNP01000019 349 0
JFNP01000183 349 0
JFNP01000177 346 0
JFNP01000198 336 0
JFNP01000135 336 0
JFNP01000189 336 0
JFNP01000196 336 0
JFNP01000054 328 0
JFNP01000075 324 0
JFNP01000094 323 0
JFNP01000156 320 0
JFNP01000105 320 0
JFNP01000103 318 0
JFNP01000093 315 0
JFNP01000108 314 0
JFNP01000074 312 0
JFNP01000060 311 0
JFNP01000085 311 0
JFNP01000100 309 0
JFNP01000139 299 0
JFNP01000199 294 0
JFNP01000018 291 0
JFNP01000204 285 0
JFNP01000201 285 0
JFNP01000055 283 0
JFNP01000084 280 0
JFNP01000099 274 0
JFNP01000118 274 0
JFNP01000012 274 0
JFNP01000197 274 0
JFNP01000038 273 0
JFNP01000187 272 0
JFNP01000193 272 0
JFNP01000091 272 0
JFNP01000032 271 0
JFNP01000063 271 0
JFNP01000098 271 0
JFNP01000178 269 0
JFNP01000062 269 0
JFNP01000138 265 0
JFNP01000061 265 0
JFNP01000102 263 0
JFNP01000003 263 0
JFNP01000036 261 0
JFNP01000134 261 0
JFNP01000133 259 0
JFNP01000116 259 0
JFNP01000101 258 0
JFNP01000025 258 0
JFNP01000057 255 0
JFNP01000096 255 0
JFNP01000194 255 0
JFNP01000035 254 0
JFNP01000053 251 0
JFNP01000192 250 0
JFNP01000141 249 0
JFNP01000059 247 0
JFNP01000088 247 0
JFNP01000030 243 0
JFNP01000117 242 0
JFNP01000068 242 0
JFNP01000086 239 0
JFNP01000026 239 0
JFNP01000095 238 0
JFNP01000186 235 0
JFNP01000195 234 0
JFNP01000137 232 0
JFNP01000031 231 0
JFNP01000058 230 0
JFNP01000146 229 0
JFNP01000191 228 0
JFNP01000024 227 0
JFNP01000168 227 0
JFNP01000092 227 0
JFNP01000070 225 0
JFNP01000029 224 0
JFNP01000089 223 0
JFNP01000017 222 0
JFNP01000180 221 0
JFNP01000171 220 0
JFNP01000181 220 0
JFNP01000065 220 0
JFNP01000077 219 0
JFNP01000179 219 0
JFNP01000175 213 0
JFNP01000132 210 0
JFNP01000087 208 0
JFNP01000172 207 0
JFNP01000056 206 0
JFNP01000020 205 0
JFNP01000188 205 0
JFNP01000023 205 0
JFNP01000104 205 0
JFNP01000028 204 0
JFNP01000107 204 0
JFNP01000027 203 0
JFNP01000182 203 0
JFNP01000176 202 0
JFNP01000112 201 0
JFNP01000064 200 0
JFNP01000067 200 0
Total 1,264,472 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000634455.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634455.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634455.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634455.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634455.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634455.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634455.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634455.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634455.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer