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cyanobase » Prochlorococcus sp. scB245a_519B7

Prochlorococcus sp. scB245a_519B7

Summary

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Data source name GCA_000634435.1
Full name Prochlorococcus sp. scB245a_519B7
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNI01000016 180,612 0
JFNI01000048 112,293 0
JFNI01000080 67,479 0
JFNI01000034 65,786 0
JFNI01000089 64,874 0
JFNI01000073 56,299 0
JFNI01000004 27,622 0
JFNI01000001 17,864 0
JFNI01000036 17,096 0
JFNI01000081 12,475 0
JFNI01000003 9,867 0
JFNI01000079 9,448 0
JFNI01000015 9,353 0
JFNI01000002 5,602 0
JFNI01000072 4,213 0
JFNI01000033 2,113 0
JFNI01000074 1,865 0
JFNI01000039 1,506 0
JFNI01000012 1,368 0
JFNI01000028 1,193 0
JFNI01000032 1,168 0
JFNI01000038 1,115 0
JFNI01000035 1,077 0
JFNI01000006 1,016 0
JFNI01000075 977 0
JFNI01000005 830 0
JFNI01000046 701 0
JFNI01000047 679 0
JFNI01000061 663 0
JFNI01000011 654 0
JFNI01000010 634 0
JFNI01000040 631 0
JFNI01000041 622 0
JFNI01000007 600 0
JFNI01000009 578 0
JFNI01000050 550 0
JFNI01000086 535 0
JFNI01000014 491 0
JFNI01000027 475 0
JFNI01000026 471 0
JFNI01000030 452 0
JFNI01000049 428 0
JFNI01000031 411 0
JFNI01000091 403 0
JFNI01000019 402 0
JFNI01000044 402 0
JFNI01000023 386 0
JFNI01000043 371 0
JFNI01000064 343 0
JFNI01000088 334 0
JFNI01000063 333 0
JFNI01000066 330 0
JFNI01000008 326 0
JFNI01000065 322 0
JFNI01000051 313 0
JFNI01000052 313 0
JFNI01000093 308 0
JFNI01000025 308 0
JFNI01000022 292 0
JFNI01000020 286 0
JFNI01000058 284 0
JFNI01000057 277 0
JFNI01000021 276 0
JFNI01000029 276 0
JFNI01000083 259 0
JFNI01000084 258 0
JFNI01000013 258 0
JFNI01000042 252 0
JFNI01000087 249 0
JFNI01000062 248 0
JFNI01000077 247 0
JFNI01000018 247 0
JFNI01000071 240 0
JFNI01000094 240 0
JFNI01000070 239 0
JFNI01000076 230 0
JFNI01000054 227 0
JFNI01000082 225 0
JFNI01000095 225 0
JFNI01000097 224 0
JFNI01000045 213 0
JFNI01000055 211 0
JFNI01000067 211 0
JFNI01000024 210 0
JFNI01000068 210 0
JFNI01000085 208 0
JFNI01000090 207 0
JFNI01000078 205 0
JFNI01000069 205 0
JFNI01000056 204 0
JFNI01000096 204 0
JFNI01000017 203 0
JFNI01000059 203 0
JFNI01000092 203 0
JFNI01000053 202 0
JFNI01000060 201 0
JFNI01000037 200 0
Total 698,939 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634435.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634435.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634435.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634435.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634435.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634435.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634435.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634435.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634435.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634435.1/genes/interpro.txt (File format)

MicrobeBase