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cyanobase » Prochlorococcus sp. scB245a_519A13

Prochlorococcus sp. scB245a_519A13

Summary

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Data source name GCA_000634415.1
Full name Prochlorococcus sp. scB245a_519A13
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNH01000118 138,630 0
JFNH01000098 130,317 0
JFNH01000096 113,336 0
JFNH01000004 106,216 0
JFNH01000008 89,767 0
JFNH01000102 66,383 0
JFNH01000167 61,657 0
JFNH01000168 61,322 0
JFNH01000100 55,457 0
JFNH01000001 33,979 0
JFNH01000106 28,716 0
JFNH01000188 25,454 0
JFNH01000114 17,383 0
JFNH01000190 16,092 0
JFNH01000141 15,474 0
JFNH01000140 11,104 0
JFNH01000205 8,505 0
JFNH01000115 7,086 0
JFNH01000099 6,896 0
JFNH01000191 6,719 0
JFNH01000174 6,038 0
JFNH01000166 5,917 0
JFNH01000107 5,164 0
JFNH01000189 4,884 0
JFNH01000101 4,772 0
JFNH01000095 4,480 0
JFNH01000103 4,174 0
JFNH01000003 3,974 0
JFNH01000175 3,489 0
JFNH01000048 3,417 0
JFNH01000081 3,215 0
JFNH01000213 2,907 0
JFNH01000147 2,714 0
JFNH01000183 2,536 0
JFNH01000075 2,457 0
JFNH01000105 2,307 0
JFNH01000002 1,877 0
JFNH01000113 1,634 0
JFNH01000006 1,614 0
JFNH01000169 1,555 0
JFNH01000068 1,423 0
JFNH01000206 1,363 0
JFNH01000076 1,362 0
JFNH01000097 1,337 0
JFNH01000104 1,309 0
JFNH01000094 1,303 0
JFNH01000128 1,261 0
JFNH01000129 1,178 0
JFNH01000112 1,123 0
JFNH01000176 1,090 0
JFNH01000063 1,075 0
JFNH01000146 1,027 0
JFNH01000193 1,009 0
JFNH01000047 993 0
JFNH01000218 970 0
JFNH01000207 944 0
JFNH01000043 944 0
JFNH01000077 936 0
JFNH01000143 900 0
JFNH01000138 887 0
JFNH01000165 841 0
JFNH01000135 835 0
JFNH01000177 807 0
JFNH01000083 775 0
JFNH01000182 766 0
JFNH01000074 750 0
JFNH01000192 737 0
JFNH01000144 731 0
JFNH01000219 670 0
JFNH01000060 623 0
JFNH01000127 611 0
JFNH01000007 609 0
JFNH01000173 604 0
JFNH01000073 602 0
JFNH01000142 579 0
JFNH01000153 575 0
JFNH01000025 572 0
JFNH01000086 567 0
JFNH01000066 563 0
JFNH01000085 557 0
JFNH01000059 552 0
JFNH01000210 540 0
JFNH01000087 539 0
JFNH01000208 522 0
JFNH01000078 522 0
JFNH01000209 519 0
JFNH01000170 511 0
JFNH01000070 493 0
JFNH01000221 493 0
JFNH01000011 490 0
JFNH01000061 459 0
JFNH01000080 456 0
JFNH01000164 454 0
JFNH01000137 452 0
JFNH01000009 450 0
JFNH01000133 447 0
JFNH01000136 445 0
JFNH01000122 440 0
JFNH01000181 431 0
JFNH01000154 428 0
JFNH01000220 424 0
JFNH01000045 407 0
JFNH01000016 403 0
JFNH01000125 399 0
JFNH01000089 398 0
JFNH01000185 397 0
JFNH01000196 389 0
JFNH01000172 383 0
JFNH01000015 383 0
JFNH01000044 381 0
JFNH01000184 379 0
JFNH01000072 371 0
JFNH01000149 369 0
JFNH01000069 369 0
JFNH01000126 367 0
JFNH01000121 365 0
JFNH01000131 365 0
JFNH01000042 364 0
JFNH01000084 359 0
JFNH01000030 358 0
JFNH01000014 357 0
JFNH01000021 355 0
JFNH01000053 353 0
JFNH01000058 348 0
JFNH01000179 347 0
JFNH01000195 347 0
JFNH01000197 346 0
JFNH01000216 344 0
JFNH01000156 343 0
JFNH01000217 340 0
JFNH01000130 333 0
JFNH01000120 330 0
JFNH01000055 329 0
JFNH01000019 327 0
JFNH01000005 326 0
JFNH01000010 324 0
JFNH01000214 324 0
JFNH01000222 321 0
JFNH01000038 318 0
JFNH01000178 318 0
JFNH01000033 316 0
JFNH01000194 315 0
JFNH01000187 310 0
JFNH01000180 309 0
JFNH01000071 299 0
JFNH01000034 299 0
JFNH01000212 296 0
JFNH01000054 295 0
JFNH01000067 293 0
JFNH01000186 292 0
JFNH01000036 291 0
JFNH01000029 286 0
JFNH01000201 285 0
JFNH01000026 283 0
JFNH01000037 280 0
JFNH01000057 280 0
JFNH01000088 280 0
JFNH01000012 279 0
JFNH01000065 275 0
JFNH01000124 272 0
JFNH01000123 272 0
JFNH01000108 272 0
JFNH01000111 270 0
JFNH01000022 270 0
JFNH01000215 266 0
JFNH01000199 264 0
JFNH01000040 262 0
JFNH01000062 262 0
JFNH01000148 260 0
JFNH01000110 260 0
JFNH01000150 258 0
JFNH01000152 256 0
JFNH01000161 254 0
JFNH01000160 252 0
JFNH01000023 247 0
JFNH01000064 246 0
JFNH01000052 243 0
JFNH01000024 243 0
JFNH01000041 242 0
JFNH01000082 239 0
JFNH01000039 238 0
JFNH01000203 235 0
JFNH01000119 235 0
JFNH01000158 234 0
JFNH01000027 234 0
JFNH01000093 232 0
JFNH01000198 230 0
JFNH01000020 230 0
JFNH01000157 230 0
JFNH01000017 230 0
JFNH01000031 230 0
JFNH01000151 228 0
JFNH01000159 227 0
JFNH01000056 227 0
JFNH01000051 224 0
JFNH01000028 223 0
JFNH01000116 222 0
JFNH01000050 222 0
JFNH01000171 221 0
JFNH01000079 221 0
JFNH01000090 218 0
JFNH01000109 217 0
JFNH01000163 217 0
JFNH01000091 214 0
JFNH01000162 214 0
JFNH01000211 213 0
JFNH01000032 212 0
JFNH01000155 211 0
JFNH01000204 211 0
JFNH01000139 211 0
JFNH01000200 210 0
JFNH01000145 209 0
JFNH01000035 208 0
JFNH01000049 206 0
JFNH01000013 205 0
JFNH01000132 204 0
JFNH01000117 203 0
JFNH01000018 202 0
JFNH01000092 202 0
JFNH01000046 201 0
JFNH01000202 200 0
JFNH01000134 200 0
Total 1,149,563 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634415.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634415.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634415.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634415.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634415.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634415.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634415.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634415.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634415.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634415.1/genes/interpro.txt (File format)

MicrobeBase