cyanobase » Prochlorococcus sp. scB245a_518D8

Prochlorococcus sp. scB245a_518D8

Summary

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Data source name GCA_000634395.1
Full name Prochlorococcus sp. scB245a_518D8 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFNB01000274 328,934 0
JFNB01000272 143,865 0
JFNB01000273 143,340 0
JFNB01000270 82,395 0
JFNB01000047 70,987 0
JFNB01000271 68,649 0
JFNB01000076 67,597 0
JFNB01000065 55,110 0
JFNB01000284 28,041 0
JFNB01000003 17,549 0
JFNB01000234 16,972 0
JFNB01000329 16,245 0
JFNB01000268 14,973 0
JFNB01000048 13,702 0
JFNB01000267 12,820 0
JFNB01000335 12,680 0
JFNB01000277 10,853 0
JFNB01000330 9,126 0
JFNB01000002 8,835 0
JFNB01000333 7,648 0
JFNB01000066 7,022 0
JFNB01000118 6,550 0
JFNB01000278 6,527 0
JFNB01000433 5,956 0
JFNB01000276 5,702 0
JFNB01000429 5,443 0
JFNB01000256 4,862 0
JFNB01000432 4,492 0
JFNB01000001 4,433 0
JFNB01000263 4,413 0
JFNB01000427 4,386 0
JFNB01000025 3,999 0
JFNB01000332 3,953 0
JFNB01000336 3,687 0
JFNB01000266 3,609 0
JFNB01000120 3,412 0
JFNB01000260 3,276 0
JFNB01000026 3,162 0
JFNB01000343 3,130 0
JFNB01000275 2,980 0
JFNB01000023 2,737 0
JFNB01000428 2,697 0
JFNB01000117 2,544 0
JFNB01000341 2,517 0
JFNB01000269 2,477 0
JFNB01000485 2,464 0
JFNB01000116 2,327 0
JFNB01000331 2,233 0
JFNB01000338 2,113 0
JFNB01000261 2,057 0
JFNB01000062 2,000 0
JFNB01000430 1,895 0
JFNB01000165 1,864 0
JFNB01000031 1,778 0
JFNB01000426 1,771 0
JFNB01000348 1,768 0
JFNB01000345 1,766 0
JFNB01000115 1,698 0
JFNB01000342 1,644 0
JFNB01000340 1,593 0
JFNB01000028 1,555 0
JFNB01000279 1,399 0
JFNB01000061 1,390 0
JFNB01000453 1,361 0
JFNB01000259 1,336 0
JFNB01000265 1,268 0
JFNB01000349 1,235 0
JFNB01000174 1,228 0
JFNB01000346 1,206 0
JFNB01000361 1,196 0
JFNB01000204 1,177 0
JFNB01000431 1,113 0
JFNB01000163 1,045 0
JFNB01000140 1,045 0
JFNB01000354 1,041 0
JFNB01000032 1,039 0
JFNB01000181 997 0
JFNB01000368 992 0
JFNB01000024 979 0
JFNB01000067 968 0
JFNB01000356 959 0
JFNB01000488 928 0
JFNB01000164 920 0
JFNB01000454 918 0
JFNB01000168 918 0
JFNB01000226 898 0
JFNB01000128 873 0
JFNB01000053 861 0
JFNB01000339 854 0
JFNB01000337 850 0
JFNB01000262 827 0
JFNB01000359 827 0
JFNB01000355 820 0
JFNB01000043 811 0
JFNB01000102 810 0
JFNB01000170 809 0
JFNB01000183 804 0
JFNB01000360 775 0
JFNB01000029 774 0
JFNB01000030 774 0
JFNB01000216 767 0
JFNB01000100 758 0
JFNB01000138 757 0
JFNB01000071 753 0
JFNB01000347 748 0
JFNB01000490 741 0
JFNB01000334 738 0
JFNB01000486 730 0
JFNB01000459 727 0
JFNB01000366 721 0
JFNB01000344 720 0
JFNB01000489 717 0
JFNB01000379 703 0
JFNB01000380 700 0
JFNB01000370 693 0
JFNB01000367 690 0
JFNB01000145 685 0
JFNB01000114 685 0
JFNB01000177 680 0
JFNB01000073 668 0
JFNB01000351 660 0
JFNB01000089 659 0
JFNB01000371 649 0
JFNB01000058 647 0
JFNB01000139 645 0
JFNB01000055 637 0
JFNB01000386 631 0
JFNB01000350 631 0
JFNB01000214 627 0
JFNB01000358 625 0
JFNB01000374 610 0
JFNB01000111 604 0
JFNB01000184 589 0
JFNB01000060 587 0
JFNB01000095 581 0
JFNB01000466 576 0
JFNB01000375 565 0
JFNB01000011 565 0
JFNB01000495 560 0
JFNB01000487 560 0
JFNB01000125 555 0
JFNB01000406 555 0
JFNB01000457 550 0
JFNB01000161 550 0
JFNB01000389 549 0
JFNB01000378 546 0
JFNB01000365 537 0
JFNB01000280 536 0
JFNB01000390 534 0
JFNB01000362 532 0
JFNB01000039 527 0
JFNB01000455 516 0
JFNB01000157 515 0
JFNB01000040 510 0
JFNB01000182 510 0
JFNB01000187 509 0
JFNB01000295 507 0
JFNB01000382 506 0
JFNB01000113 504 0
JFNB01000136 502 0
JFNB01000162 502 0
JFNB01000388 501 0
JFNB01000352 500 0
JFNB01000372 498 0
JFNB01000437 496 0
JFNB01000434 493 0
JFNB01000363 489 0
JFNB01000086 483 0
JFNB01000171 474 0
JFNB01000439 470 0
JFNB01000399 469 0
JFNB01000460 464 0
JFNB01000264 461 0
JFNB01000059 461 0
JFNB01000104 460 0
JFNB01000084 457 0
JFNB01000130 454 0
JFNB01000381 453 0
JFNB01000435 453 0
JFNB01000464 452 0
JFNB01000369 449 0
JFNB01000075 446 0
JFNB01000251 442 0
JFNB01000103 441 0
JFNB01000110 440 0
JFNB01000392 440 0
JFNB01000458 432 0
JFNB01000021 426 0
JFNB01000387 426 0
JFNB01000070 423 0
JFNB01000119 423 0
JFNB01000312 423 0
JFNB01000416 420 0
JFNB01000215 416 0
JFNB01000292 413 0
JFNB01000069 413 0
JFNB01000094 412 0
JFNB01000357 411 0
JFNB01000152 411 0
JFNB01000419 411 0
JFNB01000400 406 0
JFNB01000231 405 0
JFNB01000456 404 0
JFNB01000085 402 0
JFNB01000409 402 0
JFNB01000036 396 0
JFNB01000044 395 0
JFNB01000186 391 0
JFNB01000074 391 0
JFNB01000287 389 0
JFNB01000395 389 0
JFNB01000213 388 0
JFNB01000132 385 0
JFNB01000228 384 0
JFNB01000405 380 0
JFNB01000222 380 0
JFNB01000376 379 0
JFNB01000397 378 0
JFNB01000383 374 0
JFNB01000297 374 0
JFNB01000169 373 0
JFNB01000396 372 0
JFNB01000083 372 0
JFNB01000068 372 0
JFNB01000404 368 0
JFNB01000299 366 0
JFNB01000189 366 0
JFNB01000087 365 0
JFNB01000091 362 0
JFNB01000442 360 0
JFNB01000088 359 0
JFNB01000461 355 0
JFNB01000248 354 0
JFNB01000413 352 0
JFNB01000210 350 0
JFNB01000480 350 0
JFNB01000233 344 0
JFNB01000421 341 0
JFNB01000394 341 0
JFNB01000283 340 0
JFNB01000137 339 0
JFNB01000496 339 0
JFNB01000311 338 0
JFNB01000144 337 0
JFNB01000014 337 0
JFNB01000097 337 0
JFNB01000042 337 0
JFNB01000018 336 0
JFNB01000072 336 0
JFNB01000377 335 0
JFNB01000045 334 0
JFNB01000373 331 0
JFNB01000294 331 0
JFNB01000384 330 0
JFNB01000153 330 0
JFNB01000462 329 0
JFNB01000414 329 0
JFNB01000281 328 0
JFNB01000449 328 0
JFNB01000410 328 0
JFNB01000364 326 0
JFNB01000229 326 0
JFNB01000046 325 0
JFNB01000385 324 0
JFNB01000178 323 0
JFNB01000105 322 0
JFNB01000142 320 0
JFNB01000237 319 0
JFNB01000291 318 0
JFNB01000304 318 0
JFNB01000134 313 0
JFNB01000133 312 0
JFNB01000093 312 0
JFNB01000285 312 0
JFNB01000474 310 0
JFNB01000112 308 0
JFNB01000436 307 0
JFNB01000013 306 0
JFNB01000090 305 0
JFNB01000476 305 0
JFNB01000417 304 0
JFNB01000315 303 0
JFNB01000198 303 0
JFNB01000148 303 0
JFNB01000101 302 0
JFNB01000391 302 0
JFNB01000244 300 0
JFNB01000160 297 0
JFNB01000353 297 0
JFNB01000322 296 0
JFNB01000149 296 0
JFNB01000034 295 0
JFNB01000224 295 0
JFNB01000078 290 0
JFNB01000081 290 0
JFNB01000309 290 0
JFNB01000035 289 0
JFNB01000463 289 0
JFNB01000471 289 0
JFNB01000167 289 0
JFNB01000008 289 0
JFNB01000241 288 0
JFNB01000146 288 0
JFNB01000020 287 0
JFNB01000131 286 0
JFNB01000156 286 0
JFNB01000188 286 0
JFNB01000420 285 0
JFNB01000166 285 0
JFNB01000498 284 0
JFNB01000057 283 0
JFNB01000245 282 0
JFNB01000127 280 0
JFNB01000082 280 0
JFNB01000492 277 0
JFNB01000239 276 0
JFNB01000393 276 0
JFNB01000425 276 0
JFNB01000403 276 0
JFNB01000124 275 0
JFNB01000129 273 0
JFNB01000288 273 0
JFNB01000199 273 0
JFNB01000126 273 0
JFNB01000424 272 0
JFNB01000450 272 0
JFNB01000475 272 0
JFNB01000017 272 0
JFNB01000098 271 0
JFNB01000232 270 0
JFNB01000185 270 0
JFNB01000225 270 0
JFNB01000159 269 0
JFNB01000258 268 0
JFNB01000415 268 0
JFNB01000209 268 0
JFNB01000482 268 0
JFNB01000252 267 0
JFNB01000323 267 0
JFNB01000452 267 0
JFNB01000303 266 0
JFNB01000079 265 0
JFNB01000491 264 0
JFNB01000448 263 0
JFNB01000465 263 0
JFNB01000282 261 0
JFNB01000469 260 0
JFNB01000191 260 0
JFNB01000201 258 0
JFNB01000473 258 0
JFNB01000005 256 0
JFNB01000049 256 0
JFNB01000438 256 0
JFNB01000096 255 0
JFNB01000293 255 0
JFNB01000250 254 0
JFNB01000135 254 0
JFNB01000441 254 0
JFNB01000211 253 0
JFNB01000447 252 0
JFNB01000467 252 0
JFNB01000154 251 0
JFNB01000493 251 0
JFNB01000143 250 0
JFNB01000158 250 0
JFNB01000478 249 0
JFNB01000301 248 0
JFNB01000064 248 0
JFNB01000328 247 0
JFNB01000063 246 0
JFNB01000286 245 0
JFNB01000051 245 0
JFNB01000092 245 0
JFNB01000440 245 0
JFNB01000418 244 0
JFNB01000172 244 0
JFNB01000423 243 0
JFNB01000041 243 0
JFNB01000056 242 0
JFNB01000141 242 0
JFNB01000444 241 0
JFNB01000099 241 0
JFNB01000203 241 0
JFNB01000022 241 0
JFNB01000494 241 0
JFNB01000038 241 0
JFNB01000223 241 0
JFNB01000422 240 0
JFNB01000235 240 0
JFNB01000107 240 0
JFNB01000150 239 0
JFNB01000483 239 0
JFNB01000305 237 0
JFNB01000446 237 0
JFNB01000179 235 0
JFNB01000307 235 0
JFNB01000443 234 0
JFNB01000219 234 0
JFNB01000477 233 0
JFNB01000037 232 0
JFNB01000254 229 0
JFNB01000205 229 0
JFNB01000106 229 0
JFNB01000319 229 0
JFNB01000481 229 0
JFNB01000122 227 0
JFNB01000243 227 0
JFNB01000208 227 0
JFNB01000173 227 0
JFNB01000316 227 0
JFNB01000238 226 0
JFNB01000176 226 0
JFNB01000027 226 0
JFNB01000007 225 0
JFNB01000326 224 0
JFNB01000202 224 0
JFNB01000175 224 0
JFNB01000401 224 0
JFNB01000155 223 0
JFNB01000010 222 0
JFNB01000445 221 0
JFNB01000298 221 0
JFNB01000468 221 0
JFNB01000317 221 0
JFNB01000194 221 0
JFNB01000451 221 0
JFNB01000220 220 0
JFNB01000320 220 0
JFNB01000123 219 0
JFNB01000147 219 0
JFNB01000052 219 0
JFNB01000050 218 0
JFNB01000412 218 0
JFNB01000240 218 0
JFNB01000230 218 0
JFNB01000151 218 0
JFNB01000190 217 0
JFNB01000310 216 0
JFNB01000207 216 0
JFNB01000195 216 0
JFNB01000296 216 0
JFNB01000408 216 0
JFNB01000321 215 0
JFNB01000015 215 0
JFNB01000289 215 0
JFNB01000206 215 0
JFNB01000255 214 0
JFNB01000246 213 0
JFNB01000324 213 0
JFNB01000325 212 0
JFNB01000012 212 0
JFNB01000108 211 0
JFNB01000313 211 0
JFNB01000109 211 0
JFNB01000217 211 0
JFNB01000402 211 0
JFNB01000300 211 0
JFNB01000193 210 0
JFNB01000398 210 0
JFNB01000192 209 0
JFNB01000472 209 0
JFNB01000318 209 0
JFNB01000314 209 0
JFNB01000077 209 0
JFNB01000019 209 0
JFNB01000180 208 0
JFNB01000009 208 0
JFNB01000290 208 0
JFNB01000197 208 0
JFNB01000249 208 0
JFNB01000080 207 0
JFNB01000227 206 0
JFNB01000242 206 0
JFNB01000121 206 0
JFNB01000054 206 0
JFNB01000257 206 0
JFNB01000306 205 0
JFNB01000212 205 0
JFNB01000327 205 0
JFNB01000470 205 0
JFNB01000484 205 0
JFNB01000006 204 0
JFNB01000479 204 0
JFNB01000218 204 0
JFNB01000221 204 0
JFNB01000247 203 0
JFNB01000016 203 0
JFNB01000200 203 0
JFNB01000302 203 0
JFNB01000236 202 0
JFNB01000004 202 0
JFNB01000411 201 0
JFNB01000196 201 0
JFNB01000497 201 0
JFNB01000033 201 0
JFNB01000308 200 0
JFNB01000407 200 0
JFNB01000253 200 0
Total 1,439,677 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634395.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634395.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634395.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634395.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634395.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634395.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634395.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634395.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634395.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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