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cyanobase » Prochlorococcus sp. scB245a_518A17

Prochlorococcus sp. scB245a_518A17

Summary

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Data source name GCA_000634375.1
Full name Prochlorococcus sp. scB245a_518A17
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMZ01000077 397,847 0
JFMZ01000004 230,547 0
JFMZ01000037 209,203 0
JFMZ01000006 121,407 0
JFMZ01000075 105,697 0
JFMZ01000128 80,579 0
JFMZ01000074 70,825 0
JFMZ01000028 64,780 0
JFMZ01000007 47,252 0
JFMZ01000049 45,544 0
JFMZ01000065 44,430 0
JFMZ01000126 17,511 0
JFMZ01000001 16,901 0
JFMZ01000073 14,458 0
JFMZ01000067 11,725 0
JFMZ01000050 9,355 0
JFMZ01000093 8,695 0
JFMZ01000072 6,759 0
JFMZ01000076 5,393 0
JFMZ01000099 5,257 0
JFMZ01000127 4,523 0
JFMZ01000059 4,515 0
JFMZ01000122 4,466 0
JFMZ01000025 4,120 0
JFMZ01000109 3,530 0
JFMZ01000125 3,380 0
JFMZ01000121 3,128 0
JFMZ01000002 3,048 0
JFMZ01000094 2,920 0
JFMZ01000029 2,723 0
JFMZ01000058 2,422 0
JFMZ01000005 2,385 0
JFMZ01000130 2,289 0
JFMZ01000061 2,141 0
JFMZ01000116 2,094 0
JFMZ01000057 2,088 0
JFMZ01000070 2,013 0
JFMZ01000010 1,949 0
JFMZ01000046 1,845 0
JFMZ01000123 1,815 0
JFMZ01000062 1,796 0
JFMZ01000114 1,692 0
JFMZ01000063 1,683 0
JFMZ01000003 1,492 0
JFMZ01000048 1,467 0
JFMZ01000105 1,434 0
JFMZ01000012 1,284 0
JFMZ01000091 1,276 0
JFMZ01000103 1,187 0
JFMZ01000106 1,150 0
JFMZ01000098 1,119 0
JFMZ01000027 1,057 0
JFMZ01000021 1,036 0
JFMZ01000112 1,027 0
JFMZ01000066 1,009 0
JFMZ01000011 1,009 0
JFMZ01000089 1,004 0
JFMZ01000136 979 0
JFMZ01000107 910 0
JFMZ01000101 905 0
JFMZ01000117 850 0
JFMZ01000054 827 0
JFMZ01000092 806 0
JFMZ01000052 784 0
JFMZ01000043 761 0
JFMZ01000090 757 0
JFMZ01000080 627 0
JFMZ01000132 611 0
JFMZ01000118 609 0
JFMZ01000088 585 0
JFMZ01000113 530 0
JFMZ01000079 528 0
JFMZ01000044 523 0
JFMZ01000023 510 0
JFMZ01000111 501 0
JFMZ01000035 489 0
JFMZ01000060 471 0
JFMZ01000056 461 0
JFMZ01000045 459 0
JFMZ01000086 447 0
JFMZ01000024 439 0
JFMZ01000068 438 0
JFMZ01000009 436 0
JFMZ01000096 432 0
JFMZ01000047 430 0
JFMZ01000015 426 0
JFMZ01000131 418 0
JFMZ01000078 403 0
JFMZ01000124 402 0
JFMZ01000069 390 0
JFMZ01000110 383 0
JFMZ01000008 374 0
JFMZ01000083 372 0
JFMZ01000064 371 0
JFMZ01000020 365 0
JFMZ01000055 365 0
JFMZ01000087 361 0
JFMZ01000041 348 0
JFMZ01000051 343 0
JFMZ01000081 338 0
JFMZ01000018 337 0
JFMZ01000019 335 0
JFMZ01000084 335 0
JFMZ01000022 331 0
JFMZ01000031 317 0
JFMZ01000038 309 0
JFMZ01000014 294 0
JFMZ01000104 294 0
JFMZ01000085 291 0
JFMZ01000040 288 0
JFMZ01000102 280 0
JFMZ01000108 277 0
JFMZ01000129 267 0
JFMZ01000119 263 0
JFMZ01000030 262 0
JFMZ01000071 255 0
JFMZ01000034 255 0
JFMZ01000097 255 0
JFMZ01000095 250 0
JFMZ01000032 246 0
JFMZ01000115 246 0
JFMZ01000036 242 0
JFMZ01000026 236 0
JFMZ01000042 234 0
JFMZ01000120 221 0
JFMZ01000033 218 0
JFMZ01000016 218 0
JFMZ01000082 215 0
JFMZ01000100 214 0
JFMZ01000053 212 0
JFMZ01000039 211 0
JFMZ01000135 208 0
JFMZ01000013 206 0
JFMZ01000134 206 0
JFMZ01000017 201 0
JFMZ01000133 200 0
Total 1,625,274 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634375.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634375.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634375.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634375.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634375.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634375.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634375.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634375.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634375.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634375.1/genes/interpro.txt (File format)

MicrobeBase