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cyanobase » Prochlorococcus sp. scB243_498N8

Prochlorococcus sp. scB243_498N8

Summary

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Data source name GCA_000634355.1
Full name Prochlorococcus sp. scB243_498N8
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMW01000111 130,824 0
JFMW01000322 111,450 0
JFMW01000059 78,384 0
JFMW01000119 65,743 0
JFMW01000047 38,255 0
JFMW01000331 36,285 0
JFMW01000302 34,454 0
JFMW01000242 31,668 0
JFMW01000113 31,287 0
JFMW01000182 18,478 0
JFMW01000112 13,703 0
JFMW01000115 12,825 0
JFMW01000332 11,653 0
JFMW01000383 10,743 0
JFMW01000159 9,543 0
JFMW01000158 9,487 0
JFMW01000363 8,493 0
JFMW01000155 5,495 0
JFMW01000120 5,371 0
JFMW01000351 5,112 0
JFMW01000214 4,950 0
JFMW01000300 4,714 0
JFMW01000265 4,622 0
JFMW01000117 4,351 0
JFMW01000118 4,106 0
JFMW01000241 3,371 0
JFMW01000167 3,314 0
JFMW01000297 3,245 0
JFMW01000364 2,957 0
JFMW01000180 2,624 0
JFMW01000303 2,506 0
JFMW01000240 2,414 0
JFMW01000110 2,381 0
JFMW01000060 2,349 0
JFMW01000348 2,333 0
JFMW01000326 2,255 0
JFMW01000352 2,188 0
JFMW01000153 2,126 0
JFMW01000323 2,030 0
JFMW01000156 2,004 0
JFMW01000165 1,910 0
JFMW01000174 1,879 0
JFMW01000225 1,847 0
JFMW01000304 1,753 0
JFMW01000343 1,663 0
JFMW01000181 1,641 0
JFMW01000243 1,617 0
JFMW01000249 1,589 0
JFMW01000201 1,543 0
JFMW01000345 1,419 0
JFMW01000121 1,408 0
JFMW01000344 1,394 0
JFMW01000247 1,363 0
JFMW01000009 1,362 0
JFMW01000016 1,299 0
JFMW01000250 1,274 0
JFMW01000177 1,222 0
JFMW01000365 1,220 0
JFMW01000213 1,172 0
JFMW01000382 1,109 0
JFMW01000308 1,083 0
JFMW01000381 1,063 0
JFMW01000217 1,040 0
JFMW01000211 1,006 0
JFMW01000171 1,006 0
JFMW01000152 997 0
JFMW01000386 987 0
JFMW01000264 973 0
JFMW01000218 962 0
JFMW01000173 957 0
JFMW01000162 956 0
JFMW01000064 948 0
JFMW01000114 931 0
JFMW01000070 914 0
JFMW01000199 882 0
JFMW01000222 880 0
JFMW01000378 879 0
JFMW01000107 875 0
JFMW01000292 860 0
JFMW01000384 860 0
JFMW01000246 854 0
JFMW01000128 851 0
JFMW01000154 846 0
JFMW01000204 835 0
JFMW01000066 835 0
JFMW01000226 834 0
JFMW01000215 824 0
JFMW01000045 819 0
JFMW01000245 816 0
JFMW01000170 767 0
JFMW01000134 765 0
JFMW01000192 747 0
JFMW01000395 739 0
JFMW01000328 725 0
JFMW01000334 720 0
JFMW01000093 718 0
JFMW01000198 717 0
JFMW01000046 699 0
JFMW01000058 694 0
JFMW01000071 694 0
JFMW01000248 688 0
JFMW01000130 664 0
JFMW01000346 654 0
JFMW01000131 649 0
JFMW01000325 642 0
JFMW01000063 637 0
JFMW01000018 624 0
JFMW01000212 623 0
JFMW01000150 622 0
JFMW01000193 618 0
JFMW01000335 612 0
JFMW01000138 608 0
JFMW01000305 607 0
JFMW01000200 602 0
JFMW01000223 601 0
JFMW01000333 597 0
JFMW01000301 595 0
JFMW01000178 589 0
JFMW01000307 586 0
JFMW01000179 586 0
JFMW01000227 583 0
JFMW01000270 565 0
JFMW01000251 560 0
JFMW01000366 559 0
JFMW01000024 558 0
JFMW01000044 555 0
JFMW01000017 554 0
JFMW01000068 552 0
JFMW01000020 551 0
JFMW01000296 549 0
JFMW01000374 546 0
JFMW01000371 536 0
JFMW01000219 534 0
JFMW01000321 533 0
JFMW01000263 533 0
JFMW01000076 531 0
JFMW01000220 530 0
JFMW01000445 512 0
JFMW01000089 509 0
JFMW01000266 509 0
JFMW01000127 506 0
JFMW01000320 506 0
JFMW01000360 500 0
JFMW01000025 495 0
JFMW01000125 493 0
JFMW01000269 491 0
JFMW01000207 484 0
JFMW01000216 484 0
JFMW01000108 481 0
JFMW01000310 475 0
JFMW01000252 475 0
JFMW01000288 472 0
JFMW01000206 471 0
JFMW01000228 471 0
JFMW01000129 469 0
JFMW01000429 467 0
JFMW01000010 463 0
JFMW01000147 463 0
JFMW01000354 462 0
JFMW01000336 462 0
JFMW01000203 458 0
JFMW01000403 458 0
JFMW01000377 456 0
JFMW01000271 455 0
JFMW01000205 455 0
JFMW01000379 449 0
JFMW01000339 448 0
JFMW01000143 445 0
JFMW01000094 437 0
JFMW01000314 436 0
JFMW01000279 433 0
JFMW01000355 424 0
JFMW01000289 423 0
JFMW01000260 422 0
JFMW01000051 421 0
JFMW01000161 419 0
JFMW01000380 417 0
JFMW01000367 416 0
JFMW01000136 413 0
JFMW01000342 407 0
JFMW01000040 404 0
JFMW01000285 399 0
JFMW01000079 398 0
JFMW01000401 396 0
JFMW01000274 396 0
JFMW01000394 393 0
JFMW01000160 393 0
JFMW01000197 392 0
JFMW01000132 390 0
JFMW01000404 390 0
JFMW01000410 389 0
JFMW01000141 385 0
JFMW01000092 384 0
JFMW01000081 384 0
JFMW01000244 380 0
JFMW01000232 378 0
JFMW01000399 377 0
JFMW01000327 376 0
JFMW01000337 375 0
JFMW01000022 374 0
JFMW01000166 373 0
JFMW01000186 370 0
JFMW01000078 369 0
JFMW01000027 369 0
JFMW01000444 365 0
JFMW01000423 365 0
JFMW01000368 360 0
JFMW01000014 356 0
JFMW01000056 353 0
JFMW01000375 353 0
JFMW01000290 350 0
JFMW01000083 349 0
JFMW01000055 347 0
JFMW01000075 347 0
JFMW01000015 344 0
JFMW01000074 344 0
JFMW01000145 342 0
JFMW01000440 342 0
JFMW01000142 341 0
JFMW01000357 340 0
JFMW01000139 340 0
JFMW01000438 340 0
JFMW01000048 336 0
JFMW01000267 334 0
JFMW01000209 334 0
JFMW01000164 333 0
JFMW01000191 332 0
JFMW01000411 331 0
JFMW01000238 331 0
JFMW01000019 328 0
JFMW01000280 322 0
JFMW01000293 322 0
JFMW01000032 321 0
JFMW01000096 321 0
JFMW01000299 321 0
JFMW01000306 320 0
JFMW01000103 320 0
JFMW01000376 319 0
JFMW01000392 318 0
JFMW01000176 315 0
JFMW01000085 314 0
JFMW01000065 313 0
JFMW01000005 311 0
JFMW01000315 309 0
JFMW01000278 307 0
JFMW01000254 307 0
JFMW01000021 306 0
JFMW01000414 306 0
JFMW01000347 306 0
JFMW01000100 303 0
JFMW01000151 302 0
JFMW01000309 302 0
JFMW01000196 301 0
JFMW01000135 300 0
JFMW01000033 300 0
JFMW01000426 297 0
JFMW01000284 296 0
JFMW01000116 295 0
JFMW01000361 294 0
JFMW01000283 294 0
JFMW01000311 294 0
JFMW01000183 293 0
JFMW01000329 292 0
JFMW01000370 291 0
JFMW01000084 291 0
JFMW01000439 291 0
JFMW01000291 291 0
JFMW01000282 290 0
JFMW01000106 290 0
JFMW01000188 289 0
JFMW01000295 288 0
JFMW01000034 286 0
JFMW01000412 285 0
JFMW01000202 285 0
JFMW01000362 284 0
JFMW01000313 284 0
JFMW01000356 283 0
JFMW01000319 283 0
JFMW01000387 282 0
JFMW01000105 282 0
JFMW01000393 282 0
JFMW01000149 279 0
JFMW01000011 279 0
JFMW01000406 278 0
JFMW01000088 278 0
JFMW01000391 275 0
JFMW01000441 275 0
JFMW01000287 275 0
JFMW01000262 274 0
JFMW01000230 274 0
JFMW01000258 274 0
JFMW01000388 273 0
JFMW01000099 270 0
JFMW01000109 270 0
JFMW01000007 269 0
JFMW01000029 268 0
JFMW01000189 266 0
JFMW01000330 265 0
JFMW01000400 265 0
JFMW01000369 264 0
JFMW01000272 264 0
JFMW01000256 263 0
JFMW01000433 262 0
JFMW01000175 261 0
JFMW01000004 261 0
JFMW01000341 261 0
JFMW01000184 260 0
JFMW01000229 259 0
JFMW01000236 257 0
JFMW01000038 256 0
JFMW01000257 256 0
JFMW01000062 255 0
JFMW01000122 255 0
JFMW01000419 255 0
JFMW01000030 254 0
JFMW01000102 254 0
JFMW01000428 253 0
JFMW01000316 253 0
JFMW01000281 252 0
JFMW01000140 252 0
JFMW01000194 251 0
JFMW01000133 250 0
JFMW01000427 249 0
JFMW01000008 249 0
JFMW01000036 248 0
JFMW01000077 248 0
JFMW01000050 247 0
JFMW01000148 247 0
JFMW01000234 247 0
JFMW01000172 246 0
JFMW01000080 245 0
JFMW01000013 244 0
JFMW01000359 244 0
JFMW01000421 244 0
JFMW01000424 243 0
JFMW01000350 243 0
JFMW01000069 243 0
JFMW01000349 243 0
JFMW01000163 241 0
JFMW01000416 240 0
JFMW01000037 240 0
JFMW01000067 239 0
JFMW01000425 239 0
JFMW01000026 239 0
JFMW01000052 239 0
JFMW01000317 239 0
JFMW01000353 238 0
JFMW01000430 238 0
JFMW01000126 238 0
JFMW01000023 237 0
JFMW01000043 237 0
JFMW01000003 237 0
JFMW01000185 237 0
JFMW01000435 236 0
JFMW01000091 236 0
JFMW01000012 236 0
JFMW01000208 236 0
JFMW01000253 235 0
JFMW01000087 234 0
JFMW01000235 234 0
JFMW01000169 234 0
JFMW01000255 233 0
JFMW01000073 233 0
JFMW01000187 233 0
JFMW01000294 232 0
JFMW01000312 231 0
JFMW01000231 229 0
JFMW01000168 228 0
JFMW01000358 228 0
JFMW01000001 228 0
JFMW01000082 227 0
JFMW01000409 226 0
JFMW01000098 226 0
JFMW01000146 226 0
JFMW01000402 225 0
JFMW01000275 225 0
JFMW01000054 225 0
JFMW01000385 225 0
JFMW01000095 225 0
JFMW01000042 225 0
JFMW01000049 224 0
JFMW01000101 224 0
JFMW01000090 224 0
JFMW01000373 223 0
JFMW01000340 223 0
JFMW01000086 223 0
JFMW01000298 222 0
JFMW01000436 222 0
JFMW01000006 222 0
JFMW01000237 221 0
JFMW01000413 221 0
JFMW01000418 221 0
JFMW01000338 219 0
JFMW01000057 219 0
JFMW01000324 218 0
JFMW01000261 218 0
JFMW01000157 217 0
JFMW01000002 217 0
JFMW01000039 217 0
JFMW01000276 215 0
JFMW01000372 215 0
JFMW01000434 215 0
JFMW01000389 215 0
JFMW01000144 215 0
JFMW01000053 215 0
JFMW01000407 214 0
JFMW01000233 214 0
JFMW01000124 214 0
JFMW01000190 213 0
JFMW01000031 213 0
JFMW01000443 213 0
JFMW01000437 212 0
JFMW01000028 212 0
JFMW01000224 211 0
JFMW01000390 211 0
JFMW01000097 209 0
JFMW01000221 209 0
JFMW01000104 208 0
JFMW01000268 208 0
JFMW01000398 207 0
JFMW01000396 207 0
JFMW01000422 207 0
JFMW01000408 206 0
JFMW01000318 206 0
JFMW01000195 206 0
JFMW01000405 206 0
JFMW01000259 206 0
JFMW01000442 206 0
JFMW01000072 205 0
JFMW01000415 205 0
JFMW01000273 205 0
JFMW01000137 204 0
JFMW01000286 203 0
JFMW01000277 202 0
JFMW01000035 202 0
JFMW01000123 202 0
JFMW01000061 201 0
JFMW01000210 201 0
JFMW01000417 201 0
JFMW01000239 201 0
JFMW01000431 200 0
JFMW01000432 200 0
JFMW01000420 200 0
JFMW01000397 200 0
JFMW01000041 200 0
Total 907,618 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634355.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634355.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634355.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634355.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634355.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634355.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634355.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634355.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634355.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634355.1/genes/interpro.txt (File format)

MicrobeBase