cyanobase » Prochlorococcus sp. scB243_498N4

Prochlorococcus sp. scB243_498N4

Summary

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Data source name GCA_000634335.1
Full name Prochlorococcus sp. scB243_498N4 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMV01000003 346,321 0
JFMV01000005 249,136 0
JFMV01000037 166,606 0
JFMV01000079 135,193 0
JFMV01000071 88,999 0
JFMV01000036 83,716 0
JFMV01000081 74,742 0
JFMV01000047 49,588 0
JFMV01000080 25,023 0
JFMV01000004 22,427 0
JFMV01000006 20,908 0
JFMV01000001 13,528 0
JFMV01000012 13,132 0
JFMV01000039 11,180 0
JFMV01000063 10,553 0
JFMV01000038 8,357 0
JFMV01000040 7,385 0
JFMV01000011 6,217 0
JFMV01000066 5,945 0
JFMV01000002 4,550 0
JFMV01000070 4,334 0
JFMV01000007 4,097 0
JFMV01000062 3,584 0
JFMV01000065 2,823 0
JFMV01000068 2,759 0
JFMV01000082 2,730 0
JFMV01000118 2,000 0
JFMV01000075 1,416 0
JFMV01000076 1,386 0
JFMV01000064 1,344 0
JFMV01000074 1,209 0
JFMV01000072 1,139 0
JFMV01000067 1,075 0
JFMV01000041 1,004 0
JFMV01000049 976 0
JFMV01000028 964 0
JFMV01000069 910 0
JFMV01000008 877 0
JFMV01000010 821 0
JFMV01000103 771 0
JFMV01000101 758 0
JFMV01000083 754 0
JFMV01000034 741 0
JFMV01000019 731 0
JFMV01000016 721 0
JFMV01000052 702 0
JFMV01000025 698 0
JFMV01000048 651 0
JFMV01000073 647 0
JFMV01000100 647 0
JFMV01000035 610 0
JFMV01000111 577 0
JFMV01000033 566 0
JFMV01000121 563 0
JFMV01000046 534 0
JFMV01000124 523 0
JFMV01000022 520 0
JFMV01000053 512 0
JFMV01000078 512 0
JFMV01000117 512 0
JFMV01000042 505 0
JFMV01000058 500 0
JFMV01000021 494 0
JFMV01000098 488 0
JFMV01000043 487 0
JFMV01000106 485 0
JFMV01000084 476 0
JFMV01000105 429 0
JFMV01000015 428 0
JFMV01000020 406 0
JFMV01000109 394 0
JFMV01000085 379 0
JFMV01000050 376 0
JFMV01000045 369 0
JFMV01000096 362 0
JFMV01000032 356 0
JFMV01000029 352 0
JFMV01000092 350 0
JFMV01000120 346 0
JFMV01000110 327 0
JFMV01000090 320 0
JFMV01000097 316 0
JFMV01000126 312 0
JFMV01000013 311 0
JFMV01000125 310 0
JFMV01000107 309 0
JFMV01000009 308 0
JFMV01000051 307 0
JFMV01000017 301 0
JFMV01000119 296 0
JFMV01000104 295 0
JFMV01000030 292 0
JFMV01000123 290 0
JFMV01000059 286 0
JFMV01000057 283 0
JFMV01000113 274 0
JFMV01000014 272 0
JFMV01000099 270 0
JFMV01000087 263 0
JFMV01000091 263 0
JFMV01000044 257 0
JFMV01000018 256 0
JFMV01000077 256 0
JFMV01000027 255 0
JFMV01000115 249 0
JFMV01000102 244 0
JFMV01000056 240 0
JFMV01000026 238 0
JFMV01000088 234 0
JFMV01000060 232 0
JFMV01000061 231 0
JFMV01000023 226 0
JFMV01000054 226 0
JFMV01000112 223 0
JFMV01000122 221 0
JFMV01000114 221 0
JFMV01000093 220 0
JFMV01000116 220 0
JFMV01000089 214 0
JFMV01000108 210 0
JFMV01000024 207 0
JFMV01000095 206 0
JFMV01000086 206 0
JFMV01000055 204 0
JFMV01000031 202 0
JFMV01000094 200 0
Total 1,412,289 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634335.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634335.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634335.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634335.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634335.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634335.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634335.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634335.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634335.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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