cyanobase » Prochlorococcus sp. scB243_498J20

Prochlorococcus sp. scB243_498J20

Summary

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Data source name GCA_000634315.1
Full name Prochlorococcus sp. scB243_498J20 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFMS01000036 50,463 0
JFMS01000088 46,731 0
JFMS01000128 43,480 0
JFMS01000108 42,801 0
JFMS01000194 37,922 0
JFMS01000001 36,734 0
JFMS01000302 35,437 0
JFMS01000085 29,526 0
JFMS01000092 28,398 0
JFMS01000152 25,562 0
JFMS01000240 21,758 0
JFMS01000069 21,172 0
JFMS01000058 20,862 0
JFMS01000071 20,226 0
JFMS01000248 19,180 0
JFMS01000233 18,604 0
JFMS01000091 17,704 0
JFMS01000112 15,599 0
JFMS01000196 13,859 0
JFMS01000093 11,190 0
JFMS01000072 10,552 0
JFMS01000059 10,319 0
JFMS01000200 9,991 0
JFMS01000157 9,833 0
JFMS01000242 9,776 0
JFMS01000178 9,245 0
JFMS01000023 8,614 0
JFMS01000022 7,142 0
JFMS01000002 6,687 0
JFMS01000062 6,164 0
JFMS01000159 6,007 0
JFMS01000232 5,149 0
JFMS01000201 5,019 0
JFMS01000129 4,911 0
JFMS01000303 4,456 0
JFMS01000098 4,386 0
JFMS01000247 3,991 0
JFMS01000199 3,932 0
JFMS01000131 3,720 0
JFMS01000266 3,195 0
JFMS01000202 2,650 0
JFMS01000130 2,574 0
JFMS01000045 2,329 0
JFMS01000064 2,120 0
JFMS01000321 2,116 0
JFMS01000316 2,034 0
JFMS01000219 1,960 0
JFMS01000065 1,938 0
JFMS01000177 1,905 0
JFMS01000279 1,903 0
JFMS01000109 1,857 0
JFMS01000320 1,809 0
JFMS01000113 1,780 0
JFMS01000344 1,771 0
JFMS01000213 1,679 0
JFMS01000063 1,600 0
JFMS01000241 1,592 0
JFMS01000057 1,579 0
JFMS01000274 1,562 0
JFMS01000079 1,556 0
JFMS01000267 1,537 0
JFMS01000345 1,526 0
JFMS01000195 1,492 0
JFMS01000185 1,487 0
JFMS01000024 1,401 0
JFMS01000306 1,386 0
JFMS01000151 1,363 0
JFMS01000318 1,359 0
JFMS01000078 1,320 0
JFMS01000323 1,277 0
JFMS01000312 1,248 0
JFMS01000166 1,245 0
JFMS01000277 1,237 0
JFMS01000278 1,218 0
JFMS01000011 1,215 0
JFMS01000273 1,158 0
JFMS01000089 1,132 0
JFMS01000319 1,098 0
JFMS01000097 1,097 0
JFMS01000030 1,096 0
JFMS01000168 1,049 0
JFMS01000145 1,020 0
JFMS01000127 1,000 0
JFMS01000256 962 0
JFMS01000172 961 0
JFMS01000346 928 0
JFMS01000214 863 0
JFMS01000216 844 0
JFMS01000061 844 0
JFMS01000103 843 0
JFMS01000225 806 0
JFMS01000181 752 0
JFMS01000176 744 0
JFMS01000317 743 0
JFMS01000326 734 0
JFMS01000218 723 0
JFMS01000187 722 0
JFMS01000068 719 0
JFMS01000348 714 0
JFMS01000077 714 0
JFMS01000193 711 0
JFMS01000342 710 0
JFMS01000075 705 0
JFMS01000280 703 0
JFMS01000125 700 0
JFMS01000179 699 0
JFMS01000153 698 0
JFMS01000325 696 0
JFMS01000171 692 0
JFMS01000007 688 0
JFMS01000322 687 0
JFMS01000132 686 0
JFMS01000339 673 0
JFMS01000324 669 0
JFMS01000043 654 0
JFMS01000096 640 0
JFMS01000182 629 0
JFMS01000118 620 0
JFMS01000287 607 0
JFMS01000220 596 0
JFMS01000158 592 0
JFMS01000141 590 0
JFMS01000254 589 0
JFMS01000111 581 0
JFMS01000231 567 0
JFMS01000126 567 0
JFMS01000042 562 0
JFMS01000124 555 0
JFMS01000327 548 0
JFMS01000044 540 0
JFMS01000156 539 0
JFMS01000198 539 0
JFMS01000012 538 0
JFMS01000207 533 0
JFMS01000305 531 0
JFMS01000104 526 0
JFMS01000060 524 0
JFMS01000041 520 0
JFMS01000334 519 0
JFMS01000249 518 0
JFMS01000211 515 0
JFMS01000209 506 0
JFMS01000340 506 0
JFMS01000341 504 0
JFMS01000139 501 0
JFMS01000165 496 0
JFMS01000290 488 0
JFMS01000281 485 0
JFMS01000084 483 0
JFMS01000155 481 0
JFMS01000227 479 0
JFMS01000102 478 0
JFMS01000029 478 0
JFMS01000329 478 0
JFMS01000013 477 0
JFMS01000276 471 0
JFMS01000037 468 0
JFMS01000208 464 0
JFMS01000217 459 0
JFMS01000138 457 0
JFMS01000047 457 0
JFMS01000272 452 0
JFMS01000003 450 0
JFMS01000174 445 0
JFMS01000296 441 0
JFMS01000101 429 0
JFMS01000087 427 0
JFMS01000226 425 0
JFMS01000163 424 0
JFMS01000275 421 0
JFMS01000284 421 0
JFMS01000253 418 0
JFMS01000117 412 0
JFMS01000330 407 0
JFMS01000184 407 0
JFMS01000090 400 0
JFMS01000010 398 0
JFMS01000285 398 0
JFMS01000144 397 0
JFMS01000054 392 0
JFMS01000146 387 0
JFMS01000173 384 0
JFMS01000094 383 0
JFMS01000304 383 0
JFMS01000142 382 0
JFMS01000257 382 0
JFMS01000331 381 0
JFMS01000291 381 0
JFMS01000328 379 0
JFMS01000221 379 0
JFMS01000136 377 0
JFMS01000038 376 0
JFMS01000298 376 0
JFMS01000283 375 0
JFMS01000204 374 0
JFMS01000343 369 0
JFMS01000333 364 0
JFMS01000197 362 0
JFMS01000245 362 0
JFMS01000215 357 0
JFMS01000055 355 0
JFMS01000026 355 0
JFMS01000031 352 0
JFMS01000244 352 0
JFMS01000105 351 0
JFMS01000162 349 0
JFMS01000169 348 0
JFMS01000160 347 0
JFMS01000311 347 0
JFMS01000263 346 0
JFMS01000264 346 0
JFMS01000210 344 0
JFMS01000286 342 0
JFMS01000224 341 0
JFMS01000347 340 0
JFMS01000008 340 0
JFMS01000205 337 0
JFMS01000203 335 0
JFMS01000180 332 0
JFMS01000006 330 0
JFMS01000337 330 0
JFMS01000260 329 0
JFMS01000095 328 0
JFMS01000190 326 0
JFMS01000289 322 0
JFMS01000133 322 0
JFMS01000269 320 0
JFMS01000121 320 0
JFMS01000309 316 0
JFMS01000046 315 0
JFMS01000015 314 0
JFMS01000282 310 0
JFMS01000056 309 0
JFMS01000040 305 0
JFMS01000048 303 0
JFMS01000255 303 0
JFMS01000100 299 0
JFMS01000350 298 0
JFMS01000014 298 0
JFMS01000186 294 0
JFMS01000223 293 0
JFMS01000140 292 0
JFMS01000167 291 0
JFMS01000148 290 0
JFMS01000137 290 0
JFMS01000019 289 0
JFMS01000083 289 0
JFMS01000251 288 0
JFMS01000067 288 0
JFMS01000335 288 0
JFMS01000147 288 0
JFMS01000235 283 0
JFMS01000143 282 0
JFMS01000315 282 0
JFMS01000206 276 0
JFMS01000351 272 0
JFMS01000230 272 0
JFMS01000250 270 0
JFMS01000027 270 0
JFMS01000051 270 0
JFMS01000189 268 0
JFMS01000099 267 0
JFMS01000261 265 0
JFMS01000115 265 0
JFMS01000299 264 0
JFMS01000080 263 0
JFMS01000349 262 0
JFMS01000265 258 0
JFMS01000236 257 0
JFMS01000082 254 0
JFMS01000175 254 0
JFMS01000106 254 0
JFMS01000066 253 0
JFMS01000292 253 0
JFMS01000017 252 0
JFMS01000297 251 0
JFMS01000258 251 0
JFMS01000237 251 0
JFMS01000120 249 0
JFMS01000262 247 0
JFMS01000314 246 0
JFMS01000074 244 0
JFMS01000338 242 0
JFMS01000192 242 0
JFMS01000271 241 0
JFMS01000004 241 0
JFMS01000050 241 0
JFMS01000070 240 0
JFMS01000293 240 0
JFMS01000288 240 0
JFMS01000053 239 0
JFMS01000149 239 0
JFMS01000034 238 0
JFMS01000020 237 0
JFMS01000301 236 0
JFMS01000234 233 0
JFMS01000021 233 0
JFMS01000228 231 0
JFMS01000076 231 0
JFMS01000081 231 0
JFMS01000270 231 0
JFMS01000332 230 0
JFMS01000032 230 0
JFMS01000300 229 0
JFMS01000150 228 0
JFMS01000222 228 0
JFMS01000073 228 0
JFMS01000252 228 0
JFMS01000170 226 0
JFMS01000016 226 0
JFMS01000295 224 0
JFMS01000039 222 0
JFMS01000114 222 0
JFMS01000336 222 0
JFMS01000164 221 0
JFMS01000033 221 0
JFMS01000238 220 0
JFMS01000135 220 0
JFMS01000259 220 0
JFMS01000086 220 0
JFMS01000161 218 0
JFMS01000246 218 0
JFMS01000049 217 0
JFMS01000310 217 0
JFMS01000116 217 0
JFMS01000018 216 0
JFMS01000188 216 0
JFMS01000239 216 0
JFMS01000028 215 0
JFMS01000308 214 0
JFMS01000025 214 0
JFMS01000009 213 0
JFMS01000212 212 0
JFMS01000123 212 0
JFMS01000122 212 0
JFMS01000294 212 0
JFMS01000005 211 0
JFMS01000107 210 0
JFMS01000119 210 0
JFMS01000268 207 0
JFMS01000052 207 0
JFMS01000134 207 0
JFMS01000229 206 0
JFMS01000183 206 0
JFMS01000110 205 0
JFMS01000313 204 0
JFMS01000191 204 0
JFMS01000035 203 0
JFMS01000243 201 0
JFMS01000307 200 0
JFMS01000154 200 0
Total 860,969 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634315.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634315.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634315.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634315.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634315.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634315.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634315.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634315.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634315.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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