cyanobase » Prochlorococcus sp. scB243_498A3

Prochlorococcus sp. scB243_498A3

Summary

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Data source name GCA_000634295.1
Full name Prochlorococcus sp. scB243_498A3 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFML01000132 156,782 0
JFML01000011 155,203 0
JFML01000021 106,777 0
JFML01000181 89,844 0
JFML01000001 81,197 0
JFML01000226 77,161 0
JFML01000105 75,535 0
JFML01000131 75,101 0
JFML01000224 66,403 0
JFML01000125 63,915 0
JFML01000019 63,445 0
JFML01000208 57,342 0
JFML01000180 55,551 0
JFML01000020 47,231 0
JFML01000013 27,762 0
JFML01000160 23,108 0
JFML01000228 20,847 0
JFML01000161 20,695 0
JFML01000162 14,391 0
JFML01000138 13,782 0
JFML01000002 10,856 0
JFML01000133 9,945 0
JFML01000227 8,454 0
JFML01000225 8,071 0
JFML01000166 6,159 0
JFML01000178 5,723 0
JFML01000207 5,269 0
JFML01000163 5,198 0
JFML01000022 4,151 0
JFML01000164 3,401 0
JFML01000154 2,834 0
JFML01000165 2,740 0
JFML01000134 2,360 0
JFML01000182 2,267 0
JFML01000096 1,734 0
JFML01000223 1,700 0
JFML01000186 1,599 0
JFML01000183 1,541 0
JFML01000209 1,496 0
JFML01000239 1,461 0
JFML01000137 1,454 0
JFML01000179 1,411 0
JFML01000117 1,335 0
JFML01000123 1,324 0
JFML01000124 1,227 0
JFML01000118 1,165 0
JFML01000024 1,164 0
JFML01000012 1,138 0
JFML01000156 1,104 0
JFML01000116 1,067 0
JFML01000126 1,055 0
JFML01000120 1,049 0
JFML01000149 981 0
JFML01000176 942 0
JFML01000192 938 0
JFML01000136 907 0
JFML01000220 892 0
JFML01000153 887 0
JFML01000014 858 0
JFML01000175 853 0
JFML01000095 845 0
JFML01000007 803 0
JFML01000244 799 0
JFML01000010 750 0
JFML01000113 733 0
JFML01000127 728 0
JFML01000143 713 0
JFML01000246 703 0
JFML01000205 695 0
JFML01000152 693 0
JFML01000017 689 0
JFML01000174 684 0
JFML01000211 675 0
JFML01000167 655 0
JFML01000091 652 0
JFML01000193 632 0
JFML01000233 631 0
JFML01000128 618 0
JFML01000148 616 0
JFML01000084 611 0
JFML01000194 607 0
JFML01000177 597 0
JFML01000196 593 0
JFML01000190 587 0
JFML01000094 585 0
JFML01000189 568 0
JFML01000121 566 0
JFML01000140 561 0
JFML01000247 560 0
JFML01000206 543 0
JFML01000210 541 0
JFML01000187 526 0
JFML01000151 524 0
JFML01000129 522 0
JFML01000234 520 0
JFML01000110 519 0
JFML01000185 511 0
JFML01000085 508 0
JFML01000006 505 0
JFML01000198 504 0
JFML01000004 497 0
JFML01000204 496 0
JFML01000009 496 0
JFML01000065 493 0
JFML01000216 487 0
JFML01000023 484 0
JFML01000237 483 0
JFML01000139 478 0
JFML01000142 465 0
JFML01000171 464 0
JFML01000102 459 0
JFML01000082 431 0
JFML01000159 430 0
JFML01000051 429 0
JFML01000219 423 0
JFML01000197 420 0
JFML01000063 414 0
JFML01000184 411 0
JFML01000141 411 0
JFML01000041 402 0
JFML01000034 397 0
JFML01000111 397 0
JFML01000255 394 0
JFML01000052 394 0
JFML01000098 393 0
JFML01000222 389 0
JFML01000158 385 0
JFML01000027 378 0
JFML01000033 378 0
JFML01000046 375 0
JFML01000155 367 0
JFML01000003 366 0
JFML01000150 365 0
JFML01000250 364 0
JFML01000212 364 0
JFML01000202 361 0
JFML01000135 360 0
JFML01000099 359 0
JFML01000145 357 0
JFML01000241 353 0
JFML01000188 350 0
JFML01000076 348 0
JFML01000221 348 0
JFML01000005 348 0
JFML01000029 342 0
JFML01000235 342 0
JFML01000253 342 0
JFML01000008 340 0
JFML01000061 339 0
JFML01000214 335 0
JFML01000057 332 0
JFML01000200 331 0
JFML01000073 327 0
JFML01000203 326 0
JFML01000248 325 0
JFML01000103 323 0
JFML01000060 321 0
JFML01000238 319 0
JFML01000025 315 0
JFML01000062 315 0
JFML01000191 313 0
JFML01000090 311 0
JFML01000026 310 0
JFML01000016 309 0
JFML01000242 308 0
JFML01000101 306 0
JFML01000043 306 0
JFML01000044 304 0
JFML01000231 304 0
JFML01000048 301 0
JFML01000032 299 0
JFML01000075 297 0
JFML01000104 295 0
JFML01000069 294 0
JFML01000028 294 0
JFML01000015 291 0
JFML01000055 290 0
JFML01000097 289 0
JFML01000080 284 0
JFML01000254 282 0
JFML01000083 279 0
JFML01000078 279 0
JFML01000071 278 0
JFML01000199 275 0
JFML01000107 274 0
JFML01000232 272 0
JFML01000077 271 0
JFML01000245 271 0
JFML01000144 269 0
JFML01000251 269 0
JFML01000053 268 0
JFML01000114 267 0
JFML01000035 266 0
JFML01000086 264 0
JFML01000215 259 0
JFML01000079 258 0
JFML01000067 256 0
JFML01000092 256 0
JFML01000068 255 0
JFML01000056 254 0
JFML01000213 254 0
JFML01000130 254 0
JFML01000100 253 0
JFML01000146 252 0
JFML01000030 251 0
JFML01000236 249 0
JFML01000064 249 0
JFML01000040 248 0
JFML01000037 247 0
JFML01000122 247 0
JFML01000050 246 0
JFML01000173 245 0
JFML01000106 243 0
JFML01000249 243 0
JFML01000031 242 0
JFML01000054 240 0
JFML01000112 240 0
JFML01000045 233 0
JFML01000230 231 0
JFML01000066 230 0
JFML01000108 228 0
JFML01000072 226 0
JFML01000089 226 0
JFML01000170 225 0
JFML01000157 224 0
JFML01000115 224 0
JFML01000201 222 0
JFML01000088 222 0
JFML01000058 221 0
JFML01000047 216 0
JFML01000218 216 0
JFML01000049 215 0
JFML01000252 214 0
JFML01000195 214 0
JFML01000093 214 0
JFML01000147 214 0
JFML01000018 212 0
JFML01000168 212 0
JFML01000087 211 0
JFML01000042 210 0
JFML01000074 209 0
JFML01000109 207 0
JFML01000070 207 0
JFML01000059 207 0
JFML01000119 207 0
JFML01000229 206 0
JFML01000169 203 0
JFML01000243 203 0
JFML01000240 203 0
JFML01000039 203 0
JFML01000217 202 0
JFML01000036 201 0
JFML01000081 201 0
JFML01000038 200 0
JFML01000172 200 0
Total 1,472,540 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634295.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634295.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634295.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634295.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634295.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634295.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634295.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634295.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634295.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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