cyanobase » Prochlorococcus sp. scB243_497J18

Prochlorococcus sp. scB243_497J18

Summary

? | +/- | Top
Data source name GCA_000634275.1
Full name Prochlorococcus sp. scB243_497J18 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JFMJ01000099 323,072 0
JFMJ01000100 153,203 0
JFMJ01000104 135,990 0
JFMJ01000242 112,061 0
JFMJ01000101 106,742 0
JFMJ01000030 76,148 0
JFMJ01000151 68,114 0
JFMJ01000109 47,777 0
JFMJ01000150 37,303 0
JFMJ01000031 37,047 0
JFMJ01000004 27,127 0
JFMJ01000108 17,635 0
JFMJ01000002 16,153 0
JFMJ01000196 14,981 0
JFMJ01000107 10,671 0
JFMJ01000080 10,214 0
JFMJ01000105 7,393 0
JFMJ01000248 7,155 0
JFMJ01000120 5,861 0
JFMJ01000007 5,409 0
JFMJ01000088 5,018 0
JFMJ01000240 4,530 0
JFMJ01000079 4,250 0
JFMJ01000001 4,234 0
JFMJ01000195 3,553 0
JFMJ01000084 3,472 0
JFMJ01000162 3,458 0
JFMJ01000165 3,325 0
JFMJ01000096 3,251 0
JFMJ01000006 3,173 0
JFMJ01000086 3,078 0
JFMJ01000197 3,050 0
JFMJ01000003 2,878 0
JFMJ01000106 2,854 0
JFMJ01000146 2,799 0
JFMJ01000149 2,656 0
JFMJ01000085 2,628 0
JFMJ01000148 2,369 0
JFMJ01000250 2,298 0
JFMJ01000115 2,296 0
JFMJ01000147 2,293 0
JFMJ01000145 2,245 0
JFMJ01000223 2,200 0
JFMJ01000161 2,171 0
JFMJ01000201 1,746 0
JFMJ01000253 1,743 0
JFMJ01000087 1,682 0
JFMJ01000210 1,614 0
JFMJ01000142 1,563 0
JFMJ01000081 1,450 0
JFMJ01000111 1,449 0
JFMJ01000075 1,432 0
JFMJ01000112 1,427 0
JFMJ01000098 1,425 0
JFMJ01000249 1,418 0
JFMJ01000022 1,325 0
JFMJ01000102 1,279 0
JFMJ01000238 1,228 0
JFMJ01000082 1,212 0
JFMJ01000209 1,166 0
JFMJ01000114 1,127 0
JFMJ01000093 1,109 0
JFMJ01000193 1,078 0
JFMJ01000103 976 0
JFMJ01000199 974 0
JFMJ01000264 969 0
JFMJ01000041 936 0
JFMJ01000208 913 0
JFMJ01000094 909 0
JFMJ01000090 889 0
JFMJ01000252 887 0
JFMJ01000222 837 0
JFMJ01000167 836 0
JFMJ01000122 825 0
JFMJ01000097 816 0
JFMJ01000143 794 0
JFMJ01000231 782 0
JFMJ01000012 762 0
JFMJ01000071 741 0
JFMJ01000110 717 0
JFMJ01000251 705 0
JFMJ01000077 703 0
JFMJ01000237 684 0
JFMJ01000190 672 0
JFMJ01000255 662 0
JFMJ01000224 660 0
JFMJ01000035 647 0
JFMJ01000113 637 0
JFMJ01000200 626 0
JFMJ01000204 622 0
JFMJ01000256 611 0
JFMJ01000047 606 0
JFMJ01000185 605 0
JFMJ01000171 598 0
JFMJ01000025 593 0
JFMJ01000073 589 0
JFMJ01000119 587 0
JFMJ01000133 580 0
JFMJ01000188 577 0
JFMJ01000194 562 0
JFMJ01000009 550 0
JFMJ01000129 538 0
JFMJ01000069 525 0
JFMJ01000121 521 0
JFMJ01000062 521 0
JFMJ01000254 519 0
JFMJ01000216 513 0
JFMJ01000170 513 0
JFMJ01000005 501 0
JFMJ01000198 492 0
JFMJ01000244 489 0
JFMJ01000024 487 0
JFMJ01000070 480 0
JFMJ01000221 479 0
JFMJ01000206 475 0
JFMJ01000259 474 0
JFMJ01000010 469 0
JFMJ01000192 468 0
JFMJ01000232 464 0
JFMJ01000226 456 0
JFMJ01000174 453 0
JFMJ01000168 450 0
JFMJ01000266 442 0
JFMJ01000072 441 0
JFMJ01000060 439 0
JFMJ01000053 438 0
JFMJ01000136 437 0
JFMJ01000117 434 0
JFMJ01000046 432 0
JFMJ01000203 430 0
JFMJ01000158 430 0
JFMJ01000116 424 0
JFMJ01000131 420 0
JFMJ01000027 418 0
JFMJ01000083 415 0
JFMJ01000191 413 0
JFMJ01000169 411 0
JFMJ01000137 400 0
JFMJ01000036 394 0
JFMJ01000016 392 0
JFMJ01000066 392 0
JFMJ01000138 387 0
JFMJ01000011 386 0
JFMJ01000211 385 0
JFMJ01000163 384 0
JFMJ01000144 381 0
JFMJ01000157 377 0
JFMJ01000155 373 0
JFMJ01000181 371 0
JFMJ01000038 371 0
JFMJ01000054 369 0
JFMJ01000227 369 0
JFMJ01000207 367 0
JFMJ01000166 367 0
JFMJ01000245 366 0
JFMJ01000134 365 0
JFMJ01000026 359 0
JFMJ01000021 357 0
JFMJ01000153 357 0
JFMJ01000042 354 0
JFMJ01000239 348 0
JFMJ01000213 345 0
JFMJ01000233 336 0
JFMJ01000019 335 0
JFMJ01000089 335 0
JFMJ01000217 335 0
JFMJ01000067 333 0
JFMJ01000173 332 0
JFMJ01000177 332 0
JFMJ01000258 329 0
JFMJ01000182 326 0
JFMJ01000028 324 0
JFMJ01000037 322 0
JFMJ01000236 322 0
JFMJ01000186 321 0
JFMJ01000187 320 0
JFMJ01000176 319 0
JFMJ01000124 317 0
JFMJ01000183 316 0
JFMJ01000029 315 0
JFMJ01000184 314 0
JFMJ01000243 307 0
JFMJ01000065 305 0
JFMJ01000015 304 0
JFMJ01000034 303 0
JFMJ01000091 301 0
JFMJ01000156 300 0
JFMJ01000215 297 0
JFMJ01000128 296 0
JFMJ01000018 296 0
JFMJ01000040 295 0
JFMJ01000241 294 0
JFMJ01000218 293 0
JFMJ01000140 292 0
JFMJ01000139 291 0
JFMJ01000154 287 0
JFMJ01000032 286 0
JFMJ01000059 286 0
JFMJ01000219 285 0
JFMJ01000152 284 0
JFMJ01000063 283 0
JFMJ01000212 283 0
JFMJ01000043 281 0
JFMJ01000205 278 0
JFMJ01000064 277 0
JFMJ01000055 274 0
JFMJ01000125 267 0
JFMJ01000175 267 0
JFMJ01000058 265 0
JFMJ01000013 265 0
JFMJ01000049 265 0
JFMJ01000118 259 0
JFMJ01000202 259 0
JFMJ01000189 258 0
JFMJ01000008 257 0
JFMJ01000246 257 0
JFMJ01000228 256 0
JFMJ01000230 256 0
JFMJ01000023 254 0
JFMJ01000132 252 0
JFMJ01000262 252 0
JFMJ01000130 251 0
JFMJ01000061 250 0
JFMJ01000057 249 0
JFMJ01000179 249 0
JFMJ01000160 246 0
JFMJ01000172 246 0
JFMJ01000229 245 0
JFMJ01000050 243 0
JFMJ01000180 242 0
JFMJ01000014 241 0
JFMJ01000261 241 0
JFMJ01000092 235 0
JFMJ01000045 235 0
JFMJ01000247 235 0
JFMJ01000056 234 0
JFMJ01000123 233 0
JFMJ01000263 231 0
JFMJ01000265 230 0
JFMJ01000235 229 0
JFMJ01000051 227 0
JFMJ01000164 227 0
JFMJ01000135 226 0
JFMJ01000020 226 0
JFMJ01000127 224 0
JFMJ01000126 221 0
JFMJ01000225 220 0
JFMJ01000076 220 0
JFMJ01000068 219 0
JFMJ01000044 215 0
JFMJ01000220 215 0
JFMJ01000074 215 0
JFMJ01000033 214 0
JFMJ01000260 214 0
JFMJ01000159 211 0
JFMJ01000141 210 0
JFMJ01000039 209 0
JFMJ01000078 209 0
JFMJ01000048 208 0
JFMJ01000257 207 0
JFMJ01000095 207 0
JFMJ01000214 205 0
JFMJ01000052 205 0
JFMJ01000178 205 0
JFMJ01000234 204 0
JFMJ01000017 200 0
Total 1,401,752 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000634275.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634275.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634275.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634275.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634275.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634275.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634275.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634275.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634275.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer