cyanobase » Prochlorococcus sp. scB243_495N16

Prochlorococcus sp. scB243_495N16

Summary

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Data source name GCA_000634235.1
Full name Prochlorococcus sp. scB243_495N16 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLY01000083 193,273 0
JFLY01000126 179,514 0
JFLY01000015 132,726 0
JFLY01000136 102,115 0
JFLY01000239 79,795 0
JFLY01000089 62,733 0
JFLY01000013 57,833 0
JFLY01000145 56,699 0
JFLY01000146 47,983 0
JFLY01000212 44,019 0
JFLY01000001 39,114 0
JFLY01000160 31,572 0
JFLY01000199 30,794 0
JFLY01000082 28,613 0
JFLY01000120 25,049 0
JFLY01000137 24,451 0
JFLY01000144 20,274 0
JFLY01000003 16,517 0
JFLY01000213 16,472 0
JFLY01000198 11,368 0
JFLY01000122 11,128 0
JFLY01000261 10,104 0
JFLY01000014 9,956 0
JFLY01000143 9,280 0
JFLY01000125 8,527 0
JFLY01000209 8,336 0
JFLY01000237 7,424 0
JFLY01000002 7,173 0
JFLY01000162 6,075 0
JFLY01000158 4,304 0
JFLY01000211 3,456 0
JFLY01000190 3,272 0
JFLY01000148 2,924 0
JFLY01000232 2,846 0
JFLY01000123 2,669 0
JFLY01000194 2,390 0
JFLY01000011 2,292 0
JFLY01000244 2,279 0
JFLY01000215 2,191 0
JFLY01000187 2,038 0
JFLY01000210 1,934 0
JFLY01000004 1,915 0
JFLY01000030 1,858 0
JFLY01000127 1,779 0
JFLY01000090 1,761 0
JFLY01000129 1,757 0
JFLY01000131 1,751 0
JFLY01000201 1,652 0
JFLY01000150 1,646 0
JFLY01000128 1,602 0
JFLY01000019 1,565 0
JFLY01000195 1,525 0
JFLY01000164 1,480 0
JFLY01000189 1,435 0
JFLY01000163 1,403 0
JFLY01000020 1,361 0
JFLY01000223 1,361 0
JFLY01000029 1,358 0
JFLY01000117 1,347 0
JFLY01000017 1,307 0
JFLY01000012 1,296 0
JFLY01000166 1,245 0
JFLY01000207 1,217 0
JFLY01000050 1,169 0
JFLY01000130 1,153 0
JFLY01000159 1,111 0
JFLY01000147 1,106 0
JFLY01000156 1,094 0
JFLY01000032 1,066 0
JFLY01000161 1,028 0
JFLY01000238 1,010 0
JFLY01000263 981 0
JFLY01000256 959 0
JFLY01000044 935 0
JFLY01000264 914 0
JFLY01000113 907 0
JFLY01000233 904 0
JFLY01000068 895 0
JFLY01000067 882 0
JFLY01000203 872 0
JFLY01000214 847 0
JFLY01000167 847 0
JFLY01000116 824 0
JFLY01000109 811 0
JFLY01000230 809 0
JFLY01000022 804 0
JFLY01000066 778 0
JFLY01000037 769 0
JFLY01000058 768 0
JFLY01000257 760 0
JFLY01000204 757 0
JFLY01000236 741 0
JFLY01000062 740 0
JFLY01000191 733 0
JFLY01000027 725 0
JFLY01000229 714 0
JFLY01000028 705 0
JFLY01000016 694 0
JFLY01000174 678 0
JFLY01000069 675 0
JFLY01000245 649 0
JFLY01000135 648 0
JFLY01000026 647 0
JFLY01000070 639 0
JFLY01000142 637 0
JFLY01000036 629 0
JFLY01000193 606 0
JFLY01000051 606 0
JFLY01000061 594 0
JFLY01000208 593 0
JFLY01000175 591 0
JFLY01000262 590 0
JFLY01000071 587 0
JFLY01000153 584 0
JFLY01000200 574 0
JFLY01000073 572 0
JFLY01000152 561 0
JFLY01000240 554 0
JFLY01000059 553 0
JFLY01000006 541 0
JFLY01000149 533 0
JFLY01000206 528 0
JFLY01000132 517 0
JFLY01000139 487 0
JFLY01000155 486 0
JFLY01000023 484 0
JFLY01000074 481 0
JFLY01000226 470 0
JFLY01000258 462 0
JFLY01000246 460 0
JFLY01000035 459 0
JFLY01000104 458 0
JFLY01000235 449 0
JFLY01000173 447 0
JFLY01000151 444 0
JFLY01000119 437 0
JFLY01000140 437 0
JFLY01000133 434 0
JFLY01000008 430 0
JFLY01000087 428 0
JFLY01000057 426 0
JFLY01000056 415 0
JFLY01000021 413 0
JFLY01000034 412 0
JFLY01000172 408 0
JFLY01000054 407 0
JFLY01000202 402 0
JFLY01000250 402 0
JFLY01000111 400 0
JFLY01000218 398 0
JFLY01000181 398 0
JFLY01000219 396 0
JFLY01000252 394 0
JFLY01000197 391 0
JFLY01000114 387 0
JFLY01000255 387 0
JFLY01000047 384 0
JFLY01000064 374 0
JFLY01000039 373 0
JFLY01000024 371 0
JFLY01000096 371 0
JFLY01000098 368 0
JFLY01000165 368 0
JFLY01000224 365 0
JFLY01000205 351 0
JFLY01000081 349 0
JFLY01000124 348 0
JFLY01000259 345 0
JFLY01000196 345 0
JFLY01000220 333 0
JFLY01000231 332 0
JFLY01000249 327 0
JFLY01000216 327 0
JFLY01000088 326 0
JFLY01000247 324 0
JFLY01000092 319 0
JFLY01000043 319 0
JFLY01000010 318 0
JFLY01000248 317 0
JFLY01000052 314 0
JFLY01000178 313 0
JFLY01000105 309 0
JFLY01000112 308 0
JFLY01000222 307 0
JFLY01000048 305 0
JFLY01000080 301 0
JFLY01000009 298 0
JFLY01000042 297 0
JFLY01000099 296 0
JFLY01000171 295 0
JFLY01000063 294 0
JFLY01000065 292 0
JFLY01000184 292 0
JFLY01000025 290 0
JFLY01000076 289 0
JFLY01000055 288 0
JFLY01000251 288 0
JFLY01000093 287 0
JFLY01000094 287 0
JFLY01000086 286 0
JFLY01000169 281 0
JFLY01000118 280 0
JFLY01000221 280 0
JFLY01000253 278 0
JFLY01000157 275 0
JFLY01000179 273 0
JFLY01000033 273 0
JFLY01000079 272 0
JFLY01000108 272 0
JFLY01000040 270 0
JFLY01000007 268 0
JFLY01000110 267 0
JFLY01000018 266 0
JFLY01000046 264 0
JFLY01000072 262 0
JFLY01000075 260 0
JFLY01000100 257 0
JFLY01000182 255 0
JFLY01000121 253 0
JFLY01000186 253 0
JFLY01000101 252 0
JFLY01000045 252 0
JFLY01000084 251 0
JFLY01000038 247 0
JFLY01000260 247 0
JFLY01000254 244 0
JFLY01000241 242 0
JFLY01000177 239 0
JFLY01000077 237 0
JFLY01000078 237 0
JFLY01000180 235 0
JFLY01000107 234 0
JFLY01000217 234 0
JFLY01000138 233 0
JFLY01000106 232 0
JFLY01000228 229 0
JFLY01000243 228 0
JFLY01000183 227 0
JFLY01000031 225 0
JFLY01000041 225 0
JFLY01000091 223 0
JFLY01000085 222 0
JFLY01000115 222 0
JFLY01000170 222 0
JFLY01000134 222 0
JFLY01000227 219 0
JFLY01000176 219 0
JFLY01000095 217 0
JFLY01000053 216 0
JFLY01000049 213 0
JFLY01000188 211 0
JFLY01000185 210 0
JFLY01000192 210 0
JFLY01000141 209 0
JFLY01000242 208 0
JFLY01000097 208 0
JFLY01000154 206 0
JFLY01000005 206 0
JFLY01000168 204 0
JFLY01000102 204 0
JFLY01000234 203 0
JFLY01000103 201 0
JFLY01000060 201 0
JFLY01000225 201 0
Total 1,434,396 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634235.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634235.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634235.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634235.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634235.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634235.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634235.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634235.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634235.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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