cyanobase » Prochlorococcus sp. scB243_495L20

Prochlorococcus sp. scB243_495L20

Summary

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Data source name GCA_000634215.1
Full name Prochlorococcus sp. scB243_495L20 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLX01000001 538,731 0
JFLX01000106 159,514 0
JFLX01000091 112,037 0
JFLX01000090 91,393 0
JFLX01000113 85,766 0
JFLX01000004 85,008 0
JFLX01000116 80,222 0
JFLX01000075 55,998 0
JFLX01000079 44,833 0
JFLX01000006 37,594 0
JFLX01000019 35,972 0
JFLX01000115 34,394 0
JFLX01000002 29,549 0
JFLX01000003 18,230 0
JFLX01000078 16,274 0
JFLX01000119 16,050 0
JFLX01000007 13,484 0
JFLX01000005 13,291 0
JFLX01000076 9,479 0
JFLX01000018 6,912 0
JFLX01000109 6,086 0
JFLX01000114 5,868 0
JFLX01000085 5,576 0
JFLX01000111 4,949 0
JFLX01000083 3,257 0
JFLX01000012 3,066 0
JFLX01000084 2,503 0
JFLX01000110 2,304 0
JFLX01000107 2,134 0
JFLX01000077 2,112 0
JFLX01000118 1,569 0
JFLX01000105 1,290 0
JFLX01000046 1,275 0
JFLX01000013 1,155 0
JFLX01000074 1,063 0
JFLX01000009 1,047 0
JFLX01000127 961 0
JFLX01000087 904 0
JFLX01000141 895 0
JFLX01000008 885 0
JFLX01000126 855 0
JFLX01000096 852 0
JFLX01000128 805 0
JFLX01000100 804 0
JFLX01000142 793 0
JFLX01000089 740 0
JFLX01000017 732 0
JFLX01000081 725 0
JFLX01000088 666 0
JFLX01000022 629 0
JFLX01000143 586 0
JFLX01000103 575 0
JFLX01000064 559 0
JFLX01000067 546 0
JFLX01000016 532 0
JFLX01000108 512 0
JFLX01000010 499 0
JFLX01000129 495 0
JFLX01000072 469 0
JFLX01000086 458 0
JFLX01000021 458 0
JFLX01000134 456 0
JFLX01000097 437 0
JFLX01000092 415 0
JFLX01000043 407 0
JFLX01000030 398 0
JFLX01000033 393 0
JFLX01000136 392 0
JFLX01000031 372 0
JFLX01000029 370 0
JFLX01000035 368 0
JFLX01000101 366 0
JFLX01000135 361 0
JFLX01000055 358 0
JFLX01000070 345 0
JFLX01000082 344 0
JFLX01000034 339 0
JFLX01000120 330 0
JFLX01000063 328 0
JFLX01000020 325 0
JFLX01000050 321 0
JFLX01000068 316 0
JFLX01000065 311 0
JFLX01000038 307 0
JFLX01000057 305 0
JFLX01000014 305 0
JFLX01000130 304 0
JFLX01000037 296 0
JFLX01000024 295 0
JFLX01000062 294 0
JFLX01000095 283 0
JFLX01000049 282 0
JFLX01000051 279 0
JFLX01000011 279 0
JFLX01000140 279 0
JFLX01000054 274 0
JFLX01000036 273 0
JFLX01000132 273 0
JFLX01000015 269 0
JFLX01000124 267 0
JFLX01000137 261 0
JFLX01000123 258 0
JFLX01000044 258 0
JFLX01000099 254 0
JFLX01000121 253 0
JFLX01000098 249 0
JFLX01000056 245 0
JFLX01000112 244 0
JFLX01000125 243 0
JFLX01000048 242 0
JFLX01000061 235 0
JFLX01000133 234 0
JFLX01000039 232 0
JFLX01000047 231 0
JFLX01000026 231 0
JFLX01000058 228 0
JFLX01000032 227 0
JFLX01000073 227 0
JFLX01000131 226 0
JFLX01000040 225 0
JFLX01000080 222 0
JFLX01000042 222 0
JFLX01000053 222 0
JFLX01000045 220 0
JFLX01000122 217 0
JFLX01000023 216 0
JFLX01000028 215 0
JFLX01000059 215 0
JFLX01000093 213 0
JFLX01000027 213 0
JFLX01000104 213 0
JFLX01000069 213 0
JFLX01000094 212 0
JFLX01000117 210 0
JFLX01000066 208 0
JFLX01000102 208 0
JFLX01000071 207 0
JFLX01000041 206 0
JFLX01000138 204 0
JFLX01000025 201 0
JFLX01000139 191 0
JFLX01000052 139 0
JFLX01000060 129 0
Total 1,569,355 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634215.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634215.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634215.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634215.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634215.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634215.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634215.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634215.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634215.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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