cyanobase » Prochlorococcus sp. scB243_495D8

Prochlorococcus sp. scB243_495D8

Summary

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Data source name GCA_000634195.1
Full name Prochlorococcus sp. scB243_495D8 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLT01000187 332,876 0
JFLT01000015 226,095 0
JFLT01000186 200,938 0
JFLT01000151 114,160 0
JFLT01000068 63,361 0
JFLT01000016 51,238 0
JFLT01000150 30,881 0
JFLT01000105 29,185 0
JFLT01000019 24,841 0
JFLT01000185 10,249 0
JFLT01000137 9,492 0
JFLT01000017 6,892 0
JFLT01000141 6,300 0
JFLT01000184 6,213 0
JFLT01000148 4,925 0
JFLT01000110 4,464 0
JFLT01000072 3,968 0
JFLT01000145 3,931 0
JFLT01000149 3,539 0
JFLT01000114 3,310 0
JFLT01000001 3,308 0
JFLT01000130 2,755 0
JFLT01000094 2,366 0
JFLT01000077 1,930 0
JFLT01000018 1,472 0
JFLT01000075 1,330 0
JFLT01000153 1,326 0
JFLT01000095 1,309 0
JFLT01000142 1,241 0
JFLT01000073 1,232 0
JFLT01000152 1,143 0
JFLT01000109 1,120 0
JFLT01000079 981 0
JFLT01000059 954 0
JFLT01000054 939 0
JFLT01000078 881 0
JFLT01000057 865 0
JFLT01000032 841 0
JFLT01000113 836 0
JFLT01000048 816 0
JFLT01000002 813 0
JFLT01000138 809 0
JFLT01000129 780 0
JFLT01000132 777 0
JFLT01000174 773 0
JFLT01000139 769 0
JFLT01000144 732 0
JFLT01000115 727 0
JFLT01000147 693 0
JFLT01000034 689 0
JFLT01000087 687 0
JFLT01000066 675 0
JFLT01000131 652 0
JFLT01000051 644 0
JFLT01000135 644 0
JFLT01000027 626 0
JFLT01000093 624 0
JFLT01000197 621 0
JFLT01000134 593 0
JFLT01000121 589 0
JFLT01000166 564 0
JFLT01000074 562 0
JFLT01000028 553 0
JFLT01000045 548 0
JFLT01000033 542 0
JFLT01000049 541 0
JFLT01000071 539 0
JFLT01000111 537 0
JFLT01000030 526 0
JFLT01000069 526 0
JFLT01000061 525 0
JFLT01000055 520 0
JFLT01000052 519 0
JFLT01000042 519 0
JFLT01000176 517 0
JFLT01000124 515 0
JFLT01000108 509 0
JFLT01000162 489 0
JFLT01000065 480 0
JFLT01000157 479 0
JFLT01000058 477 0
JFLT01000100 472 0
JFLT01000041 467 0
JFLT01000014 437 0
JFLT01000136 435 0
JFLT01000067 433 0
JFLT01000009 433 0
JFLT01000178 431 0
JFLT01000047 425 0
JFLT01000117 423 0
JFLT01000122 413 0
JFLT01000043 412 0
JFLT01000056 410 0
JFLT01000040 406 0
JFLT01000003 405 0
JFLT01000126 395 0
JFLT01000007 393 0
JFLT01000089 381 0
JFLT01000091 380 0
JFLT01000023 377 0
JFLT01000155 376 0
JFLT01000120 374 0
JFLT01000143 373 0
JFLT01000164 371 0
JFLT01000171 369 0
JFLT01000064 368 0
JFLT01000209 362 0
JFLT01000169 354 0
JFLT01000198 353 0
JFLT01000201 349 0
JFLT01000116 347 0
JFLT01000107 345 0
JFLT01000118 344 0
JFLT01000199 344 0
JFLT01000182 343 0
JFLT01000053 342 0
JFLT01000204 339 0
JFLT01000208 339 0
JFLT01000086 336 0
JFLT01000031 335 0
JFLT01000167 331 0
JFLT01000159 326 0
JFLT01000035 323 0
JFLT01000039 322 0
JFLT01000013 321 0
JFLT01000090 321 0
JFLT01000060 321 0
JFLT01000175 320 0
JFLT01000206 318 0
JFLT01000156 317 0
JFLT01000092 312 0
JFLT01000104 309 0
JFLT01000202 309 0
JFLT01000127 309 0
JFLT01000084 309 0
JFLT01000020 307 0
JFLT01000133 306 0
JFLT01000180 306 0
JFLT01000146 304 0
JFLT01000070 303 0
JFLT01000181 299 0
JFLT01000099 296 0
JFLT01000179 293 0
JFLT01000165 291 0
JFLT01000119 291 0
JFLT01000022 291 0
JFLT01000098 290 0
JFLT01000112 289 0
JFLT01000050 287 0
JFLT01000211 287 0
JFLT01000082 284 0
JFLT01000012 277 0
JFLT01000205 271 0
JFLT01000096 270 0
JFLT01000044 269 0
JFLT01000036 265 0
JFLT01000158 261 0
JFLT01000123 261 0
JFLT01000097 257 0
JFLT01000063 256 0
JFLT01000046 255 0
JFLT01000011 254 0
JFLT01000140 252 0
JFLT01000188 251 0
JFLT01000163 250 0
JFLT01000173 248 0
JFLT01000081 247 0
JFLT01000160 247 0
JFLT01000172 246 0
JFLT01000080 246 0
JFLT01000170 243 0
JFLT01000192 242 0
JFLT01000024 241 0
JFLT01000026 241 0
JFLT01000125 240 0
JFLT01000203 239 0
JFLT01000168 238 0
JFLT01000006 237 0
JFLT01000128 237 0
JFLT01000083 237 0
JFLT01000076 235 0
JFLT01000183 234 0
JFLT01000103 233 0
JFLT01000102 232 0
JFLT01000161 231 0
JFLT01000021 231 0
JFLT01000085 230 0
JFLT01000037 230 0
JFLT01000177 228 0
JFLT01000004 226 0
JFLT01000189 224 0
JFLT01000038 220 0
JFLT01000101 220 0
JFLT01000062 219 0
JFLT01000191 216 0
JFLT01000029 216 0
JFLT01000190 213 0
JFLT01000207 208 0
JFLT01000088 208 0
JFLT01000210 207 0
JFLT01000010 205 0
JFLT01000193 204 0
JFLT01000195 204 0
JFLT01000200 203 0
JFLT01000196 203 0
JFLT01000154 202 0
JFLT01000025 201 0
JFLT01000106 201 0
JFLT01000008 201 0
JFLT01000005 201 0
JFLT01000194 200 0
Total 1,227,854 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634195.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634195.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634195.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634195.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634195.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634195.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634195.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634195.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634195.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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