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cyanobase » Prochlorococcus sp. scB241_529D18

Prochlorococcus sp. scB241_529D18

Summary

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Data source name GCA_000634175.1
Full name Prochlorococcus sp. scB241_529D18
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLO01000128 233,178 0
JFLO01000127 152,835 0
JFLO01000002 133,901 0
JFLO01000016 123,669 0
JFLO01000043 114,818 0
JFLO01000006 107,553 0
JFLO01000096 104,889 0
JFLO01000131 98,190 0
JFLO01000004 73,599 0
JFLO01000040 60,968 0
JFLO01000071 55,592 0
JFLO01000104 44,909 0
JFLO01000015 25,800 0
JFLO01000005 21,279 0
JFLO01000106 12,508 0
JFLO01000105 11,703 0
JFLO01000014 11,476 0
JFLO01000003 10,023 0
JFLO01000058 9,371 0
JFLO01000094 6,885 0
JFLO01000001 4,604 0
JFLO01000013 3,834 0
JFLO01000046 2,439 0
JFLO01000108 2,222 0
JFLO01000148 2,198 0
JFLO01000068 2,170 0
JFLO01000050 1,939 0
JFLO01000084 1,760 0
JFLO01000088 1,606 0
JFLO01000149 1,586 0
JFLO01000130 1,543 0
JFLO01000061 1,473 0
JFLO01000146 1,400 0
JFLO01000167 1,396 0
JFLO01000087 1,335 0
JFLO01000035 1,334 0
JFLO01000076 1,272 0
JFLO01000101 1,252 0
JFLO01000012 1,236 0
JFLO01000122 1,208 0
JFLO01000093 1,146 0
JFLO01000007 1,065 0
JFLO01000047 1,002 0
JFLO01000120 988 0
JFLO01000052 974 0
JFLO01000151 974 0
JFLO01000102 966 0
JFLO01000070 966 0
JFLO01000009 961 0
JFLO01000053 950 0
JFLO01000109 938 0
JFLO01000150 922 0
JFLO01000138 905 0
JFLO01000042 877 0
JFLO01000154 858 0
JFLO01000134 852 0
JFLO01000121 834 0
JFLO01000091 815 0
JFLO01000098 808 0
JFLO01000118 785 0
JFLO01000041 751 0
JFLO01000160 736 0
JFLO01000034 723 0
JFLO01000119 707 0
JFLO01000073 701 0
JFLO01000147 701 0
JFLO01000115 697 0
JFLO01000044 682 0
JFLO01000116 650 0
JFLO01000110 630 0
JFLO01000081 620 0
JFLO01000037 616 0
JFLO01000064 570 0
JFLO01000086 568 0
JFLO01000085 538 0
JFLO01000137 532 0
JFLO01000125 531 0
JFLO01000163 528 0
JFLO01000095 519 0
JFLO01000078 517 0
JFLO01000097 516 0
JFLO01000080 515 0
JFLO01000155 515 0
JFLO01000089 511 0
JFLO01000112 501 0
JFLO01000063 497 0
JFLO01000126 496 0
JFLO01000045 493 0
JFLO01000170 478 0
JFLO01000010 471 0
JFLO01000158 470 0
JFLO01000039 466 0
JFLO01000030 454 0
JFLO01000062 444 0
JFLO01000156 426 0
JFLO01000069 425 0
JFLO01000022 414 0
JFLO01000028 414 0
JFLO01000153 411 0
JFLO01000135 410 0
JFLO01000129 402 0
JFLO01000059 401 0
JFLO01000074 398 0
JFLO01000025 393 0
JFLO01000082 386 0
JFLO01000124 385 0
JFLO01000133 374 0
JFLO01000100 370 0
JFLO01000018 367 0
JFLO01000024 367 0
JFLO01000159 362 0
JFLO01000152 356 0
JFLO01000054 356 0
JFLO01000092 347 0
JFLO01000117 344 0
JFLO01000049 342 0
JFLO01000066 339 0
JFLO01000017 339 0
JFLO01000132 338 0
JFLO01000011 334 0
JFLO01000157 331 0
JFLO01000136 328 0
JFLO01000113 322 0
JFLO01000029 320 0
JFLO01000031 318 0
JFLO01000023 314 0
JFLO01000140 300 0
JFLO01000051 295 0
JFLO01000021 291 0
JFLO01000168 290 0
JFLO01000077 288 0
JFLO01000083 285 0
JFLO01000026 277 0
JFLO01000032 274 0
JFLO01000008 272 0
JFLO01000169 266 0
JFLO01000036 262 0
JFLO01000055 262 0
JFLO01000144 261 0
JFLO01000107 261 0
JFLO01000079 259 0
JFLO01000020 257 0
JFLO01000143 255 0
JFLO01000075 254 0
JFLO01000067 251 0
JFLO01000165 248 0
JFLO01000139 247 0
JFLO01000048 246 0
JFLO01000166 246 0
JFLO01000111 243 0
JFLO01000114 242 0
JFLO01000123 241 0
JFLO01000056 240 0
JFLO01000033 238 0
JFLO01000065 235 0
JFLO01000145 235 0
JFLO01000099 231 0
JFLO01000164 229 0
JFLO01000027 228 0
JFLO01000038 227 0
JFLO01000060 226 0
JFLO01000162 225 0
JFLO01000090 221 0
JFLO01000072 212 0
JFLO01000019 206 0
JFLO01000103 205 0
JFLO01000161 202 0
JFLO01000057 202 0
JFLO01000141 201 0
JFLO01000142 201 0
Total 1,511,453 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634175.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634175.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634175.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634175.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634175.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634175.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634175.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634175.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634175.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634175.1/genes/interpro.txt (File format)

MicrobeBase