cyanobase » Prochlorococcus sp. scB241_529C4

Prochlorococcus sp. scB241_529C4

Summary

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Data source name GCA_000634155.1
Full name Prochlorococcus sp. scB241_529C4 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLN01000177 298,751 0
JFLN01000155 272,504 0
JFLN01000158 252,660 0
JFLN01000032 145,252 0
JFLN01000156 130,582 0
JFLN01000154 75,457 0
JFLN01000124 54,684 0
JFLN01000075 49,968 0
JFLN01000004 35,547 0
JFLN01000093 27,366 0
JFLN01000106 21,269 0
JFLN01000001 17,388 0
JFLN01000094 13,716 0
JFLN01000005 13,067 0
JFLN01000031 10,178 0
JFLN01000076 9,232 0
JFLN01000157 9,192 0
JFLN01000003 7,940 0
JFLN01000104 6,448 0
JFLN01000089 6,321 0
JFLN01000092 5,927 0
JFLN01000074 5,861 0
JFLN01000050 5,294 0
JFLN01000115 4,807 0
JFLN01000091 4,743 0
JFLN01000029 4,697 0
JFLN01000002 4,535 0
JFLN01000052 4,085 0
JFLN01000097 3,761 0
JFLN01000025 2,775 0
JFLN01000126 2,624 0
JFLN01000057 2,551 0
JFLN01000184 2,348 0
JFLN01000180 2,285 0
JFLN01000148 2,104 0
JFLN01000110 2,009 0
JFLN01000006 1,984 0
JFLN01000033 1,978 0
JFLN01000037 1,841 0
JFLN01000149 1,606 0
JFLN01000068 1,535 0
JFLN01000051 1,487 0
JFLN01000030 1,419 0
JFLN01000151 1,415 0
JFLN01000059 1,410 0
JFLN01000060 1,378 0
JFLN01000027 1,360 0
JFLN01000187 1,357 0
JFLN01000096 1,331 0
JFLN01000181 1,272 0
JFLN01000042 1,190 0
JFLN01000007 1,156 0
JFLN01000098 1,149 0
JFLN01000108 1,124 0
JFLN01000088 1,121 0
JFLN01000009 1,107 0
JFLN01000176 1,106 0
JFLN01000130 1,099 0
JFLN01000152 1,082 0
JFLN01000023 1,028 0
JFLN01000063 1,017 0
JFLN01000090 1,006 0
JFLN01000026 979 0
JFLN01000109 963 0
JFLN01000178 952 0
JFLN01000028 862 0
JFLN01000132 851 0
JFLN01000121 846 0
JFLN01000118 832 0
JFLN01000150 812 0
JFLN01000054 805 0
JFLN01000064 797 0
JFLN01000117 769 0
JFLN01000047 755 0
JFLN01000084 731 0
JFLN01000112 716 0
JFLN01000125 701 0
JFLN01000173 699 0
JFLN01000014 697 0
JFLN01000163 695 0
JFLN01000048 686 0
JFLN01000119 650 0
JFLN01000071 637 0
JFLN01000182 637 0
JFLN01000069 627 0
JFLN01000153 608 0
JFLN01000116 606 0
JFLN01000183 601 0
JFLN01000175 599 0
JFLN01000061 596 0
JFLN01000067 595 0
JFLN01000174 582 0
JFLN01000035 570 0
JFLN01000185 562 0
JFLN01000159 542 0
JFLN01000122 542 0
JFLN01000172 523 0
JFLN01000045 495 0
JFLN01000102 494 0
JFLN01000080 485 0
JFLN01000086 484 0
JFLN01000024 483 0
JFLN01000041 481 0
JFLN01000081 464 0
JFLN01000040 455 0
JFLN01000078 454 0
JFLN01000095 452 0
JFLN01000179 447 0
JFLN01000147 444 0
JFLN01000161 443 0
JFLN01000034 437 0
JFLN01000105 433 0
JFLN01000164 427 0
JFLN01000168 422 0
JFLN01000131 416 0
JFLN01000162 415 0
JFLN01000128 415 0
JFLN01000111 415 0
JFLN01000169 405 0
JFLN01000170 400 0
JFLN01000113 400 0
JFLN01000087 400 0
JFLN01000114 398 0
JFLN01000167 388 0
JFLN01000135 387 0
JFLN01000123 386 0
JFLN01000053 383 0
JFLN01000139 378 0
JFLN01000099 374 0
JFLN01000044 365 0
JFLN01000062 358 0
JFLN01000134 358 0
JFLN01000038 356 0
JFLN01000107 343 0
JFLN01000165 342 0
JFLN01000136 341 0
JFLN01000160 339 0
JFLN01000058 339 0
JFLN01000101 337 0
JFLN01000022 333 0
JFLN01000013 325 0
JFLN01000065 324 0
JFLN01000073 323 0
JFLN01000100 317 0
JFLN01000043 315 0
JFLN01000129 312 0
JFLN01000072 312 0
JFLN01000066 312 0
JFLN01000036 302 0
JFLN01000020 299 0
JFLN01000077 293 0
JFLN01000021 291 0
JFLN01000055 291 0
JFLN01000017 291 0
JFLN01000039 290 0
JFLN01000015 290 0
JFLN01000141 288 0
JFLN01000144 287 0
JFLN01000082 282 0
JFLN01000012 279 0
JFLN01000138 268 0
JFLN01000016 265 0
JFLN01000140 251 0
JFLN01000146 249 0
JFLN01000166 246 0
JFLN01000103 244 0
JFLN01000186 242 0
JFLN01000171 238 0
JFLN01000127 238 0
JFLN01000056 235 0
JFLN01000145 234 0
JFLN01000008 228 0
JFLN01000137 227 0
JFLN01000142 219 0
JFLN01000070 219 0
JFLN01000143 215 0
JFLN01000085 215 0
JFLN01000010 213 0
JFLN01000018 212 0
JFLN01000046 211 0
JFLN01000019 209 0
JFLN01000083 209 0
JFLN01000120 208 0
JFLN01000049 208 0
JFLN01000133 203 0
JFLN01000079 202 0
JFLN01000011 200 0
Total 1,606,813 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634155.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634155.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634155.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634155.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634155.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634155.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634155.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634155.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634155.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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