cyanobase » Prochlorococcus sp. scB241_528O2

Prochlorococcus sp. scB241_528O2

Summary

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Data source name GCA_000634115.1
Full name Prochlorococcus sp. scB241_528O2 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLJ01000113 198,380 0
JFLJ01000156 188,937 0
JFLJ01000175 95,214 0
JFLJ01000130 89,701 0
JFLJ01000108 88,368 0
JFLJ01000123 82,780 0
JFLJ01000137 69,227 0
JFLJ01000060 65,489 0
JFLJ01000095 53,315 0
JFLJ01000111 52,085 0
JFLJ01000115 42,894 0
JFLJ01000132 39,082 0
JFLJ01000114 30,799 0
JFLJ01000134 26,342 0
JFLJ01000158 22,891 0
JFLJ01000024 22,513 0
JFLJ01000135 22,114 0
JFLJ01000100 18,360 0
JFLJ01000102 17,426 0
JFLJ01000096 16,007 0
JFLJ01000103 14,852 0
JFLJ01000097 13,015 0
JFLJ01000112 12,401 0
JFLJ01000101 10,915 0
JFLJ01000129 10,803 0
JFLJ01000099 9,905 0
JFLJ01000061 9,804 0
JFLJ01000116 9,323 0
JFLJ01000081 9,141 0
JFLJ01000080 8,160 0
JFLJ01000098 7,920 0
JFLJ01000110 7,721 0
JFLJ01000104 6,716 0
JFLJ01000157 6,115 0
JFLJ01000094 5,720 0
JFLJ01000117 5,236 0
JFLJ01000084 5,092 0
JFLJ01000155 4,996 0
JFLJ01000023 4,350 0
JFLJ01000078 3,593 0
JFLJ01000215 3,412 0
JFLJ01000136 3,352 0
JFLJ01000131 2,855 0
JFLJ01000033 2,621 0
JFLJ01000076 2,577 0
JFLJ01000177 2,553 0
JFLJ01000059 2,552 0
JFLJ01000138 2,546 0
JFLJ01000221 2,405 0
JFLJ01000013 2,097 0
JFLJ01000219 1,913 0
JFLJ01000191 1,858 0
JFLJ01000079 1,809 0
JFLJ01000193 1,750 0
JFLJ01000083 1,696 0
JFLJ01000133 1,662 0
JFLJ01000189 1,644 0
JFLJ01000220 1,641 0
JFLJ01000122 1,526 0
JFLJ01000085 1,520 0
JFLJ01000144 1,490 0
JFLJ01000160 1,470 0
JFLJ01000192 1,446 0
JFLJ01000008 1,373 0
JFLJ01000001 1,284 0
JFLJ01000009 1,244 0
JFLJ01000091 1,221 0
JFLJ01000082 1,172 0
JFLJ01000167 1,099 0
JFLJ01000011 1,096 0
JFLJ01000178 1,089 0
JFLJ01000075 1,056 0
JFLJ01000195 1,049 0
JFLJ01000190 1,040 0
JFLJ01000026 1,012 0
JFLJ01000037 1,010 0
JFLJ01000230 954 0
JFLJ01000229 946 0
JFLJ01000120 918 0
JFLJ01000194 898 0
JFLJ01000201 893 0
JFLJ01000199 891 0
JFLJ01000159 886 0
JFLJ01000181 867 0
JFLJ01000016 843 0
JFLJ01000145 796 0
JFLJ01000142 750 0
JFLJ01000086 730 0
JFLJ01000017 728 0
JFLJ01000107 728 0
JFLJ01000166 716 0
JFLJ01000140 707 0
JFLJ01000162 679 0
JFLJ01000022 672 0
JFLJ01000139 671 0
JFLJ01000164 661 0
JFLJ01000032 655 0
JFLJ01000010 637 0
JFLJ01000222 627 0
JFLJ01000036 608 0
JFLJ01000007 606 0
JFLJ01000044 601 0
JFLJ01000197 570 0
JFLJ01000021 568 0
JFLJ01000204 568 0
JFLJ01000124 556 0
JFLJ01000025 543 0
JFLJ01000030 540 0
JFLJ01000054 528 0
JFLJ01000093 516 0
JFLJ01000049 508 0
JFLJ01000170 505 0
JFLJ01000198 494 0
JFLJ01000089 488 0
JFLJ01000141 485 0
JFLJ01000072 472 0
JFLJ01000012 468 0
JFLJ01000200 442 0
JFLJ01000041 435 0
JFLJ01000018 428 0
JFLJ01000223 423 0
JFLJ01000039 422 0
JFLJ01000066 421 0
JFLJ01000040 419 0
JFLJ01000038 415 0
JFLJ01000070 405 0
JFLJ01000224 404 0
JFLJ01000231 403 0
JFLJ01000180 399 0
JFLJ01000143 393 0
JFLJ01000068 391 0
JFLJ01000206 390 0
JFLJ01000151 390 0
JFLJ01000213 387 0
JFLJ01000205 386 0
JFLJ01000043 364 0
JFLJ01000069 362 0
JFLJ01000063 358 0
JFLJ01000146 354 0
JFLJ01000062 348 0
JFLJ01000015 346 0
JFLJ01000125 344 0
JFLJ01000019 341 0
JFLJ01000207 340 0
JFLJ01000152 334 0
JFLJ01000196 334 0
JFLJ01000065 329 0
JFLJ01000202 328 0
JFLJ01000118 322 0
JFLJ01000042 320 0
JFLJ01000147 318 0
JFLJ01000186 318 0
JFLJ01000153 316 0
JFLJ01000225 314 0
JFLJ01000014 313 0
JFLJ01000077 311 0
JFLJ01000121 311 0
JFLJ01000034 305 0
JFLJ01000058 304 0
JFLJ01000179 302 0
JFLJ01000090 302 0
JFLJ01000203 299 0
JFLJ01000053 299 0
JFLJ01000227 298 0
JFLJ01000050 293 0
JFLJ01000006 293 0
JFLJ01000163 293 0
JFLJ01000228 293 0
JFLJ01000148 290 0
JFLJ01000005 285 0
JFLJ01000071 282 0
JFLJ01000149 282 0
JFLJ01000073 281 0
JFLJ01000027 280 0
JFLJ01000064 278 0
JFLJ01000105 275 0
JFLJ01000226 275 0
JFLJ01000214 274 0
JFLJ01000074 271 0
JFLJ01000046 271 0
JFLJ01000173 270 0
JFLJ01000029 260 0
JFLJ01000087 260 0
JFLJ01000126 257 0
JFLJ01000169 257 0
JFLJ01000209 256 0
JFLJ01000217 255 0
JFLJ01000045 252 0
JFLJ01000055 251 0
JFLJ01000067 251 0
JFLJ01000109 250 0
JFLJ01000218 249 0
JFLJ01000174 246 0
JFLJ01000187 245 0
JFLJ01000232 245 0
JFLJ01000047 244 0
JFLJ01000161 243 0
JFLJ01000056 243 0
JFLJ01000211 242 0
JFLJ01000154 238 0
JFLJ01000128 235 0
JFLJ01000210 235 0
JFLJ01000003 235 0
JFLJ01000031 233 0
JFLJ01000176 233 0
JFLJ01000216 233 0
JFLJ01000028 231 0
JFLJ01000035 231 0
JFLJ01000106 230 0
JFLJ01000004 228 0
JFLJ01000212 228 0
JFLJ01000208 226 0
JFLJ01000150 225 0
JFLJ01000183 224 0
JFLJ01000119 223 0
JFLJ01000168 221 0
JFLJ01000048 221 0
JFLJ01000051 219 0
JFLJ01000188 218 0
JFLJ01000171 216 0
JFLJ01000127 212 0
JFLJ01000182 212 0
JFLJ01000020 212 0
JFLJ01000165 212 0
JFLJ01000057 211 0
JFLJ01000172 210 0
JFLJ01000185 208 0
JFLJ01000092 207 0
JFLJ01000184 206 0
JFLJ01000002 206 0
JFLJ01000052 205 0
JFLJ01000088 204 0
Total 1,531,686 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634115.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634115.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634115.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634115.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634115.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634115.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634115.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634115.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634115.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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