cyanobase » Prochlorococcus sp. scB241_528J8

Prochlorococcus sp. scB241_528J8

Summary

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Data source name GCA_000634095.1
Full name Prochlorococcus sp. scB241_528J8 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLE01000075 225,134 0
JFLE01000091 208,405 0
JFLE01000084 190,349 0
JFLE01000049 170,424 0
JFLE01000089 138,208 0
JFLE01000113 113,498 0
JFLE01000057 107,797 0
JFLE01000059 76,911 0
JFLE01000017 76,826 0
JFLE01000092 24,896 0
JFLE01000087 23,220 0
JFLE01000088 20,626 0
JFLE01000130 12,226 0
JFLE01000154 10,231 0
JFLE01000090 9,708 0
JFLE01000074 9,620 0
JFLE01000086 9,037 0
JFLE01000014 8,225 0
JFLE01000148 6,730 0
JFLE01000114 6,488 0
JFLE01000085 6,059 0
JFLE01000048 5,686 0
JFLE01000002 5,579 0
JFLE01000016 5,509 0
JFLE01000015 5,441 0
JFLE01000115 4,605 0
JFLE01000080 4,296 0
JFLE01000003 2,976 0
JFLE01000077 2,814 0
JFLE01000058 2,720 0
JFLE01000018 2,622 0
JFLE01000081 2,431 0
JFLE01000128 2,265 0
JFLE01000156 2,147 0
JFLE01000133 2,018 0
JFLE01000129 2,014 0
JFLE01000078 1,931 0
JFLE01000135 1,889 0
JFLE01000079 1,698 0
JFLE01000007 1,687 0
JFLE01000082 1,665 0
JFLE01000150 1,534 0
JFLE01000093 1,419 0
JFLE01000153 1,341 0
JFLE01000056 1,326 0
JFLE01000005 1,301 0
JFLE01000001 1,195 0
JFLE01000132 1,184 0
JFLE01000013 1,175 0
JFLE01000083 1,136 0
JFLE01000125 1,134 0
JFLE01000134 1,104 0
JFLE01000127 1,053 0
JFLE01000098 1,041 0
JFLE01000151 1,031 0
JFLE01000073 938 0
JFLE01000030 822 0
JFLE01000138 806 0
JFLE01000162 800 0
JFLE01000008 767 0
JFLE01000143 749 0
JFLE01000076 748 0
JFLE01000099 711 0
JFLE01000112 704 0
JFLE01000103 693 0
JFLE01000155 689 0
JFLE01000006 688 0
JFLE01000064 654 0
JFLE01000011 641 0
JFLE01000141 634 0
JFLE01000053 627 0
JFLE01000026 625 0
JFLE01000009 614 0
JFLE01000160 589 0
JFLE01000022 569 0
JFLE01000033 567 0
JFLE01000149 566 0
JFLE01000102 563 0
JFLE01000031 519 0
JFLE01000055 519 0
JFLE01000126 512 0
JFLE01000166 505 0
JFLE01000051 498 0
JFLE01000100 497 0
JFLE01000070 495 0
JFLE01000122 482 0
JFLE01000165 474 0
JFLE01000140 465 0
JFLE01000158 435 0
JFLE01000131 435 0
JFLE01000118 426 0
JFLE01000164 425 0
JFLE01000152 416 0
JFLE01000142 408 0
JFLE01000119 407 0
JFLE01000047 405 0
JFLE01000045 403 0
JFLE01000038 402 0
JFLE01000024 401 0
JFLE01000124 394 0
JFLE01000161 389 0
JFLE01000097 369 0
JFLE01000025 368 0
JFLE01000159 368 0
JFLE01000032 363 0
JFLE01000012 363 0
JFLE01000116 361 0
JFLE01000042 358 0
JFLE01000067 357 0
JFLE01000121 357 0
JFLE01000139 356 0
JFLE01000004 355 0
JFLE01000052 342 0
JFLE01000123 341 0
JFLE01000040 339 0
JFLE01000054 333 0
JFLE01000046 328 0
JFLE01000029 326 0
JFLE01000105 319 0
JFLE01000041 318 0
JFLE01000157 314 0
JFLE01000109 309 0
JFLE01000023 304 0
JFLE01000021 288 0
JFLE01000106 287 0
JFLE01000036 286 0
JFLE01000096 285 0
JFLE01000069 281 0
JFLE01000044 280 0
JFLE01000120 278 0
JFLE01000071 276 0
JFLE01000010 273 0
JFLE01000108 270 0
JFLE01000020 270 0
JFLE01000027 265 0
JFLE01000034 264 0
JFLE01000101 263 0
JFLE01000068 261 0
JFLE01000137 256 0
JFLE01000063 256 0
JFLE01000095 254 0
JFLE01000043 253 0
JFLE01000062 251 0
JFLE01000065 246 0
JFLE01000035 245 0
JFLE01000146 235 0
JFLE01000111 227 0
JFLE01000066 222 0
JFLE01000136 221 0
JFLE01000019 221 0
JFLE01000094 220 0
JFLE01000163 215 0
JFLE01000117 213 0
JFLE01000061 212 0
JFLE01000147 210 0
JFLE01000110 210 0
JFLE01000144 209 0
JFLE01000104 209 0
JFLE01000039 208 0
JFLE01000037 206 0
JFLE01000028 204 0
JFLE01000107 203 0
JFLE01000050 203 0
JFLE01000072 201 0
JFLE01000145 200 0
JFLE01000060 200 0
Total 1,577,546 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000634095.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000634095.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000634095.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634095.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634095.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634095.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634095.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634095.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634095.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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