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cyanobase » Prochlorococcus sp. scB241_528J14

Prochlorococcus sp. scB241_528J14

Summary

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Data source name GCA_000634075.1
Full name Prochlorococcus sp. scB241_528J14
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLD01000186 106,644 0
JFLD01000026 105,007 0
JFLD01000302 103,963 0
JFLD01000038 70,749 0
JFLD01000118 70,436 0
JFLD01000223 66,223 0
JFLD01000052 61,223 0
JFLD01000002 46,814 0
JFLD01000257 44,660 0
JFLD01000296 31,295 0
JFLD01000001 29,018 0
JFLD01000303 27,741 0
JFLD01000304 27,479 0
JFLD01000224 21,058 0
JFLD01000295 20,712 0
JFLD01000225 20,086 0
JFLD01000273 18,634 0
JFLD01000051 15,996 0
JFLD01000305 15,339 0
JFLD01000239 14,917 0
JFLD01000238 8,486 0
JFLD01000240 7,480 0
JFLD01000272 7,399 0
JFLD01000310 6,858 0
JFLD01000293 6,408 0
JFLD01000306 6,201 0
JFLD01000004 5,908 0
JFLD01000003 5,555 0
JFLD01000252 5,262 0
JFLD01000120 5,210 0
JFLD01000189 4,503 0
JFLD01000028 4,062 0
JFLD01000309 4,012 0
JFLD01000233 3,887 0
JFLD01000323 3,871 0
JFLD01000089 3,679 0
JFLD01000253 3,671 0
JFLD01000092 3,598 0
JFLD01000307 3,423 0
JFLD01000037 3,414 0
JFLD01000185 3,103 0
JFLD01000179 2,477 0
JFLD01000292 2,381 0
JFLD01000258 2,350 0
JFLD01000082 2,108 0
JFLD01000119 2,078 0
JFLD01000254 2,075 0
JFLD01000027 2,056 0
JFLD01000190 2,047 0
JFLD01000041 2,025 0
JFLD01000193 1,995 0
JFLD01000313 1,959 0
JFLD01000274 1,935 0
JFLD01000192 1,894 0
JFLD01000091 1,834 0
JFLD01000314 1,752 0
JFLD01000102 1,696 0
JFLD01000096 1,606 0
JFLD01000073 1,597 0
JFLD01000180 1,586 0
JFLD01000072 1,472 0
JFLD01000236 1,457 0
JFLD01000178 1,423 0
JFLD01000234 1,386 0
JFLD01000039 1,363 0
JFLD01000040 1,299 0
JFLD01000184 1,278 0
JFLD01000024 1,266 0
JFLD01000113 1,249 0
JFLD01000315 1,244 0
JFLD01000111 1,205 0
JFLD01000227 1,204 0
JFLD01000083 1,202 0
JFLD01000255 1,185 0
JFLD01000259 1,107 0
JFLD01000282 1,076 0
JFLD01000025 1,075 0
JFLD01000271 1,063 0
JFLD01000246 1,059 0
JFLD01000249 1,047 0
JFLD01000056 995 0
JFLD01000110 967 0
JFLD01000237 936 0
JFLD01000050 919 0
JFLD01000181 913 0
JFLD01000260 907 0
JFLD01000020 863 0
JFLD01000104 841 0
JFLD01000023 818 0
JFLD01000132 801 0
JFLD01000215 794 0
JFLD01000116 793 0
JFLD01000245 777 0
JFLD01000321 763 0
JFLD01000316 753 0
JFLD01000097 743 0
JFLD01000014 726 0
JFLD01000182 717 0
JFLD01000226 699 0
JFLD01000081 692 0
JFLD01000058 683 0
JFLD01000214 674 0
JFLD01000174 668 0
JFLD01000317 654 0
JFLD01000166 651 0
JFLD01000231 648 0
JFLD01000294 648 0
JFLD01000114 643 0
JFLD01000222 637 0
JFLD01000248 627 0
JFLD01000103 626 0
JFLD01000221 625 0
JFLD01000085 617 0
JFLD01000211 610 0
JFLD01000265 605 0
JFLD01000129 602 0
JFLD01000308 602 0
JFLD01000276 599 0
JFLD01000177 581 0
JFLD01000030 575 0
JFLD01000194 567 0
JFLD01000021 560 0
JFLD01000094 559 0
JFLD01000209 557 0
JFLD01000187 557 0
JFLD01000196 556 0
JFLD01000232 556 0
JFLD01000105 556 0
JFLD01000071 552 0
JFLD01000088 545 0
JFLD01000244 529 0
JFLD01000284 527 0
JFLD01000261 524 0
JFLD01000279 523 0
JFLD01000277 522 0
JFLD01000208 519 0
JFLD01000297 510 0
JFLD01000212 507 0
JFLD01000022 503 0
JFLD01000011 502 0
JFLD01000191 501 0
JFLD01000044 500 0
JFLD01000079 496 0
JFLD01000324 489 0
JFLD01000320 481 0
JFLD01000218 473 0
JFLD01000281 472 0
JFLD01000235 471 0
JFLD01000291 470 0
JFLD01000106 469 0
JFLD01000095 468 0
JFLD01000086 464 0
JFLD01000016 464 0
JFLD01000128 460 0
JFLD01000325 451 0
JFLD01000290 451 0
JFLD01000156 449 0
JFLD01000048 448 0
JFLD01000247 447 0
JFLD01000075 444 0
JFLD01000059 440 0
JFLD01000101 440 0
JFLD01000065 439 0
JFLD01000006 433 0
JFLD01000289 431 0
JFLD01000319 429 0
JFLD01000145 428 0
JFLD01000322 426 0
JFLD01000195 425 0
JFLD01000130 422 0
JFLD01000242 420 0
JFLD01000067 419 0
JFLD01000013 415 0
JFLD01000217 415 0
JFLD01000057 414 0
JFLD01000229 411 0
JFLD01000170 406 0
JFLD01000250 404 0
JFLD01000090 400 0
JFLD01000127 397 0
JFLD01000084 392 0
JFLD01000267 390 0
JFLD01000148 388 0
JFLD01000054 388 0
JFLD01000131 381 0
JFLD01000115 379 0
JFLD01000171 374 0
JFLD01000010 366 0
JFLD01000318 365 0
JFLD01000109 364 0
JFLD01000139 364 0
JFLD01000031 360 0
JFLD01000017 359 0
JFLD01000015 358 0
JFLD01000140 349 0
JFLD01000117 346 0
JFLD01000150 346 0
JFLD01000019 341 0
JFLD01000125 337 0
JFLD01000100 337 0
JFLD01000283 336 0
JFLD01000007 335 0
JFLD01000206 334 0
JFLD01000108 334 0
JFLD01000230 332 0
JFLD01000043 332 0
JFLD01000173 331 0
JFLD01000066 330 0
JFLD01000112 329 0
JFLD01000078 327 0
JFLD01000204 327 0
JFLD01000035 320 0
JFLD01000188 319 0
JFLD01000270 318 0
JFLD01000053 316 0
JFLD01000136 316 0
JFLD01000093 315 0
JFLD01000060 310 0
JFLD01000042 310 0
JFLD01000126 308 0
JFLD01000146 305 0
JFLD01000087 304 0
JFLD01000137 303 0
JFLD01000144 302 0
JFLD01000285 301 0
JFLD01000018 298 0
JFLD01000061 296 0
JFLD01000012 293 0
JFLD01000141 293 0
JFLD01000213 292 0
JFLD01000172 291 0
JFLD01000064 286 0
JFLD01000219 284 0
JFLD01000275 283 0
JFLD01000312 283 0
JFLD01000124 281 0
JFLD01000153 280 0
JFLD01000143 278 0
JFLD01000268 277 0
JFLD01000251 277 0
JFLD01000287 277 0
JFLD01000098 274 0
JFLD01000068 271 0
JFLD01000033 270 0
JFLD01000163 270 0
JFLD01000158 269 0
JFLD01000149 269 0
JFLD01000069 268 0
JFLD01000256 267 0
JFLD01000203 267 0
JFLD01000147 266 0
JFLD01000286 266 0
JFLD01000167 266 0
JFLD01000157 264 0
JFLD01000301 264 0
JFLD01000032 261 0
JFLD01000151 261 0
JFLD01000220 260 0
JFLD01000202 260 0
JFLD01000280 259 0
JFLD01000269 259 0
JFLD01000216 257 0
JFLD01000135 256 0
JFLD01000165 256 0
JFLD01000122 256 0
JFLD01000262 251 0
JFLD01000210 250 0
JFLD01000198 250 0
JFLD01000107 248 0
JFLD01000046 246 0
JFLD01000076 239 0
JFLD01000047 235 0
JFLD01000199 233 0
JFLD01000133 232 0
JFLD01000201 232 0
JFLD01000155 231 0
JFLD01000168 230 0
JFLD01000162 230 0
JFLD01000009 229 0
JFLD01000263 227 0
JFLD01000241 226 0
JFLD01000062 226 0
JFLD01000134 226 0
JFLD01000049 225 0
JFLD01000161 225 0
JFLD01000070 225 0
JFLD01000080 224 0
JFLD01000099 223 0
JFLD01000264 222 0
JFLD01000036 221 0
JFLD01000278 217 0
JFLD01000063 217 0
JFLD01000266 217 0
JFLD01000138 216 0
JFLD01000288 216 0
JFLD01000200 214 0
JFLD01000207 214 0
JFLD01000055 213 0
JFLD01000183 212 0
JFLD01000034 211 0
JFLD01000008 211 0
JFLD01000005 211 0
JFLD01000074 211 0
JFLD01000300 210 0
JFLD01000142 210 0
JFLD01000029 210 0
JFLD01000311 209 0
JFLD01000169 209 0
JFLD01000197 208 0
JFLD01000243 208 0
JFLD01000159 208 0
JFLD01000205 207 0
JFLD01000326 207 0
JFLD01000152 207 0
JFLD01000121 205 0
JFLD01000176 204 0
JFLD01000160 204 0
JFLD01000175 204 0
JFLD01000123 203 0
JFLD01000164 202 0
JFLD01000154 201 0
JFLD01000228 201 0
JFLD01000077 200 0
JFLD01000299 200 0
JFLD01000045 200 0
JFLD01000298 200 0
Total 1,183,086 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634075.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634075.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634075.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634075.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634075.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634075.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634075.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634075.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634075.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634075.1/genes/interpro.txt (File format)

MicrobeBase