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cyanobase » Prochlorococcus sp. scB241_527N11

Prochlorococcus sp. scB241_527N11

Summary

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Data source name GCA_000634055.1
Full name Prochlorococcus sp. scB241_527N11
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFLB01000266 316,730 0
JFLB01000212 114,870 0
JFLB01000213 95,137 0
JFLB01000210 88,636 0
JFLB01000192 79,694 0
JFLB01000001 78,302 0
JFLB01000211 58,091 0
JFLB01000263 53,108 0
JFLB01000209 51,759 0
JFLB01000104 44,353 0
JFLB01000264 44,344 0
JFLB01000218 43,935 0
JFLB01000190 33,515 0
JFLB01000167 29,092 0
JFLB01000217 25,766 0
JFLB01000262 24,950 0
JFLB01000214 13,858 0
JFLB01000184 11,441 0
JFLB01000174 7,152 0
JFLB01000105 6,477 0
JFLB01000235 5,498 0
JFLB01000193 5,273 0
JFLB01000038 5,025 0
JFLB01000030 4,517 0
JFLB01000101 4,184 0
JFLB01000164 3,887 0
JFLB01000205 3,841 0
JFLB01000014 3,825 0
JFLB01000024 3,684 0
JFLB01000236 3,557 0
JFLB01000047 3,328 0
JFLB01000009 3,270 0
JFLB01000029 2,925 0
JFLB01000238 2,859 0
JFLB01000046 2,691 0
JFLB01000018 2,567 0
JFLB01000094 2,512 0
JFLB01000223 2,506 0
JFLB01000221 2,475 0
JFLB01000281 2,442 0
JFLB01000041 2,390 0
JFLB01000103 2,298 0
JFLB01000102 2,231 0
JFLB01000023 2,222 0
JFLB01000159 2,202 0
JFLB01000155 2,177 0
JFLB01000208 2,139 0
JFLB01000198 2,080 0
JFLB01000187 2,064 0
JFLB01000181 2,049 0
JFLB01000282 2,038 0
JFLB01000040 1,939 0
JFLB01000237 1,926 0
JFLB01000063 1,880 0
JFLB01000222 1,844 0
JFLB01000005 1,829 0
JFLB01000059 1,816 0
JFLB01000311 1,767 0
JFLB01000162 1,730 0
JFLB01000202 1,722 0
JFLB01000037 1,693 0
JFLB01000180 1,651 0
JFLB01000188 1,605 0
JFLB01000215 1,587 0
JFLB01000204 1,586 0
JFLB01000070 1,571 0
JFLB01000166 1,553 0
JFLB01000028 1,544 0
JFLB01000319 1,543 0
JFLB01000069 1,532 0
JFLB01000095 1,513 0
JFLB01000098 1,450 0
JFLB01000220 1,417 0
JFLB01000279 1,326 0
JFLB01000045 1,313 0
JFLB01000171 1,273 0
JFLB01000320 1,226 0
JFLB01000148 1,218 0
JFLB01000158 1,198 0
JFLB01000032 1,186 0
JFLB01000284 1,173 0
JFLB01000310 1,171 0
JFLB01000003 1,168 0
JFLB01000025 1,163 0
JFLB01000013 1,144 0
JFLB01000169 1,142 0
JFLB01000163 1,137 0
JFLB01000302 1,104 0
JFLB01000031 1,081 0
JFLB01000182 1,077 0
JFLB01000283 1,053 0
JFLB01000168 1,050 0
JFLB01000147 1,045 0
JFLB01000075 1,022 0
JFLB01000197 1,010 0
JFLB01000099 997 0
JFLB01000229 993 0
JFLB01000056 979 0
JFLB01000234 979 0
JFLB01000313 971 0
JFLB01000176 964 0
JFLB01000152 961 0
JFLB01000179 953 0
JFLB01000058 942 0
JFLB01000207 940 0
JFLB01000119 931 0
JFLB01000161 901 0
JFLB01000115 896 0
JFLB01000225 886 0
JFLB01000203 868 0
JFLB01000288 858 0
JFLB01000314 841 0
JFLB01000100 841 0
JFLB01000280 836 0
JFLB01000151 834 0
JFLB01000154 791 0
JFLB01000233 772 0
JFLB01000039 744 0
JFLB01000294 726 0
JFLB01000004 724 0
JFLB01000153 723 0
JFLB01000206 713 0
JFLB01000228 711 0
JFLB01000219 699 0
JFLB01000027 696 0
JFLB01000265 693 0
JFLB01000012 682 0
JFLB01000010 675 0
JFLB01000157 673 0
JFLB01000034 665 0
JFLB01000017 659 0
JFLB01000170 643 0
JFLB01000285 634 0
JFLB01000054 629 0
JFLB01000173 620 0
JFLB01000303 620 0
JFLB01000110 614 0
JFLB01000224 613 0
JFLB01000139 607 0
JFLB01000287 607 0
JFLB01000062 602 0
JFLB01000177 601 0
JFLB01000297 598 0
JFLB01000066 597 0
JFLB01000061 587 0
JFLB01000189 579 0
JFLB01000201 576 0
JFLB01000290 573 0
JFLB01000068 572 0
JFLB01000022 562 0
JFLB01000113 558 0
JFLB01000051 555 0
JFLB01000144 551 0
JFLB01000273 550 0
JFLB01000300 546 0
JFLB01000065 541 0
JFLB01000146 541 0
JFLB01000299 537 0
JFLB01000006 533 0
JFLB01000149 533 0
JFLB01000321 530 0
JFLB01000292 530 0
JFLB01000008 525 0
JFLB01000232 523 0
JFLB01000185 520 0
JFLB01000140 519 0
JFLB01000016 519 0
JFLB01000067 515 0
JFLB01000015 508 0
JFLB01000050 506 0
JFLB01000183 497 0
JFLB01000081 489 0
JFLB01000286 485 0
JFLB01000055 481 0
JFLB01000053 479 0
JFLB01000002 469 0
JFLB01000117 468 0
JFLB01000312 461 0
JFLB01000096 456 0
JFLB01000156 447 0
JFLB01000091 447 0
JFLB01000316 445 0
JFLB01000108 440 0
JFLB01000315 440 0
JFLB01000133 440 0
JFLB01000033 439 0
JFLB01000114 439 0
JFLB01000160 436 0
JFLB01000289 433 0
JFLB01000172 432 0
JFLB01000019 428 0
JFLB01000230 423 0
JFLB01000106 416 0
JFLB01000227 409 0
JFLB01000049 407 0
JFLB01000257 407 0
JFLB01000125 406 0
JFLB01000239 403 0
JFLB01000298 402 0
JFLB01000141 397 0
JFLB01000093 396 0
JFLB01000042 395 0
JFLB01000241 389 0
JFLB01000087 380 0
JFLB01000291 376 0
JFLB01000150 375 0
JFLB01000071 369 0
JFLB01000072 369 0
JFLB01000043 366 0
JFLB01000128 366 0
JFLB01000195 361 0
JFLB01000243 360 0
JFLB01000107 356 0
JFLB01000255 352 0
JFLB01000086 348 0
JFLB01000122 348 0
JFLB01000143 343 0
JFLB01000242 343 0
JFLB01000259 342 0
JFLB01000145 341 0
JFLB01000138 341 0
JFLB01000129 337 0
JFLB01000057 335 0
JFLB01000074 335 0
JFLB01000296 333 0
JFLB01000293 329 0
JFLB01000007 328 0
JFLB01000135 324 0
JFLB01000088 323 0
JFLB01000175 323 0
JFLB01000231 322 0
JFLB01000275 320 0
JFLB01000194 320 0
JFLB01000254 318 0
JFLB01000083 318 0
JFLB01000080 312 0
JFLB01000256 308 0
JFLB01000085 305 0
JFLB01000044 304 0
JFLB01000131 304 0
JFLB01000082 302 0
JFLB01000077 302 0
JFLB01000248 300 0
JFLB01000036 300 0
JFLB01000026 300 0
JFLB01000052 299 0
JFLB01000271 299 0
JFLB01000048 298 0
JFLB01000109 294 0
JFLB01000309 291 0
JFLB01000165 290 0
JFLB01000244 289 0
JFLB01000269 288 0
JFLB01000276 287 0
JFLB01000305 286 0
JFLB01000317 283 0
JFLB01000121 280 0
JFLB01000126 280 0
JFLB01000136 279 0
JFLB01000268 278 0
JFLB01000191 278 0
JFLB01000097 277 0
JFLB01000260 277 0
JFLB01000240 275 0
JFLB01000111 274 0
JFLB01000200 273 0
JFLB01000064 271 0
JFLB01000250 271 0
JFLB01000035 271 0
JFLB01000132 267 0
JFLB01000251 264 0
JFLB01000178 264 0
JFLB01000142 263 0
JFLB01000116 257 0
JFLB01000308 256 0
JFLB01000112 255 0
JFLB01000252 254 0
JFLB01000295 253 0
JFLB01000127 252 0
JFLB01000216 251 0
JFLB01000270 251 0
JFLB01000196 250 0
JFLB01000134 250 0
JFLB01000246 249 0
JFLB01000226 247 0
JFLB01000130 246 0
JFLB01000073 245 0
JFLB01000021 245 0
JFLB01000020 243 0
JFLB01000249 241 0
JFLB01000011 238 0
JFLB01000199 236 0
JFLB01000118 232 0
JFLB01000318 231 0
JFLB01000079 230 0
JFLB01000301 228 0
JFLB01000278 228 0
JFLB01000089 227 0
JFLB01000261 227 0
JFLB01000272 223 0
JFLB01000245 220 0
JFLB01000277 220 0
JFLB01000124 219 0
JFLB01000120 215 0
JFLB01000090 213 0
JFLB01000258 212 0
JFLB01000084 212 0
JFLB01000304 211 0
JFLB01000307 211 0
JFLB01000137 208 0
JFLB01000060 206 0
JFLB01000253 206 0
JFLB01000078 205 0
JFLB01000092 205 0
JFLB01000076 203 0
JFLB01000267 202 0
JFLB01000123 202 0
JFLB01000274 201 0
JFLB01000306 201 0
JFLB01000186 201 0
JFLB01000247 200 0
Total 1,476,938 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634055.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634055.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634055.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634055.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634055.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634055.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634055.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634055.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634055.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634055.1/genes/interpro.txt (File format)

MicrobeBase