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cyanobase » Prochlorococcus sp. scB241_527E14

Prochlorococcus sp. scB241_527E14

Summary

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Data source name GCA_000634035.1
Full name Prochlorococcus sp. scB241_527E14
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKU01000036 103,465 0
JFKU01000099 81,996 0
JFKU01000157 75,008 0
JFKU01000183 74,810 0
JFKU01000002 74,508 0
JFKU01000127 73,048 0
JFKU01000081 54,483 0
JFKU01000236 50,331 0
JFKU01000115 48,361 0
JFKU01000158 31,922 0
JFKU01000160 29,803 0
JFKU01000235 27,723 0
JFKU01000035 27,474 0
JFKU01000005 26,917 0
JFKU01000006 26,854 0
JFKU01000159 22,931 0
JFKU01000001 19,176 0
JFKU01000256 18,060 0
JFKU01000252 12,255 0
JFKU01000095 11,490 0
JFKU01000020 10,420 0
JFKU01000237 8,913 0
JFKU01000019 8,878 0
JFKU01000155 8,230 0
JFKU01000098 7,811 0
JFKU01000067 7,574 0
JFKU01000253 6,946 0
JFKU01000230 5,136 0
JFKU01000147 4,374 0
JFKU01000096 4,358 0
JFKU01000082 4,174 0
JFKU01000018 3,891 0
JFKU01000051 3,207 0
JFKU01000251 3,130 0
JFKU01000128 3,006 0
JFKU01000053 2,727 0
JFKU01000083 2,650 0
JFKU01000050 2,454 0
JFKU01000014 2,380 0
JFKU01000079 2,267 0
JFKU01000012 1,948 0
JFKU01000249 1,886 0
JFKU01000260 1,856 0
JFKU01000156 1,797 0
JFKU01000204 1,674 0
JFKU01000116 1,656 0
JFKU01000013 1,617 0
JFKU01000152 1,587 0
JFKU01000191 1,478 0
JFKU01000153 1,440 0
JFKU01000034 1,440 0
JFKU01000267 1,377 0
JFKU01000148 1,375 0
JFKU01000233 1,277 0
JFKU01000238 1,266 0
JFKU01000231 1,206 0
JFKU01000250 1,202 0
JFKU01000032 1,190 0
JFKU01000197 1,173 0
JFKU01000199 1,157 0
JFKU01000066 1,136 0
JFKU01000254 1,124 0
JFKU01000022 1,107 0
JFKU01000024 1,088 0
JFKU01000052 1,034 0
JFKU01000129 1,024 0
JFKU01000226 1,014 0
JFKU01000192 985 0
JFKU01000057 968 0
JFKU01000101 955 0
JFKU01000149 927 0
JFKU01000221 926 0
JFKU01000189 914 0
JFKU01000187 913 0
JFKU01000261 846 0
JFKU01000271 836 0
JFKU01000025 832 0
JFKU01000077 828 0
JFKU01000097 824 0
JFKU01000162 792 0
JFKU01000010 785 0
JFKU01000071 774 0
JFKU01000047 756 0
JFKU01000178 754 0
JFKU01000239 715 0
JFKU01000055 701 0
JFKU01000142 681 0
JFKU01000200 680 0
JFKU01000208 677 0
JFKU01000023 667 0
JFKU01000138 667 0
JFKU01000046 661 0
JFKU01000182 659 0
JFKU01000072 657 0
JFKU01000054 648 0
JFKU01000180 643 0
JFKU01000196 636 0
JFKU01000179 622 0
JFKU01000108 621 0
JFKU01000136 611 0
JFKU01000065 602 0
JFKU01000228 589 0
JFKU01000205 586 0
JFKU01000210 584 0
JFKU01000232 576 0
JFKU01000211 572 0
JFKU01000203 562 0
JFKU01000177 550 0
JFKU01000033 544 0
JFKU01000190 543 0
JFKU01000058 542 0
JFKU01000016 533 0
JFKU01000102 526 0
JFKU01000026 524 0
JFKU01000085 516 0
JFKU01000105 515 0
JFKU01000114 511 0
JFKU01000103 501 0
JFKU01000003 497 0
JFKU01000049 488 0
JFKU01000146 474 0
JFKU01000220 474 0
JFKU01000217 462 0
JFKU01000029 458 0
JFKU01000009 429 0
JFKU01000037 424 0
JFKU01000144 420 0
JFKU01000048 403 0
JFKU01000193 401 0
JFKU01000056 399 0
JFKU01000104 396 0
JFKU01000134 391 0
JFKU01000088 386 0
JFKU01000110 385 0
JFKU01000011 384 0
JFKU01000174 381 0
JFKU01000070 375 0
JFKU01000086 372 0
JFKU01000094 359 0
JFKU01000135 358 0
JFKU01000195 357 0
JFKU01000246 356 0
JFKU01000064 354 0
JFKU01000240 351 0
JFKU01000119 351 0
JFKU01000126 348 0
JFKU01000060 348 0
JFKU01000264 348 0
JFKU01000137 346 0
JFKU01000017 344 0
JFKU01000222 344 0
JFKU01000109 343 0
JFKU01000123 343 0
JFKU01000207 340 0
JFKU01000080 340 0
JFKU01000133 335 0
JFKU01000186 334 0
JFKU01000068 334 0
JFKU01000030 332 0
JFKU01000125 330 0
JFKU01000069 328 0
JFKU01000245 320 0
JFKU01000214 317 0
JFKU01000198 315 0
JFKU01000111 314 0
JFKU01000040 312 0
JFKU01000089 309 0
JFKU01000021 300 0
JFKU01000181 299 0
JFKU01000216 299 0
JFKU01000074 296 0
JFKU01000120 296 0
JFKU01000257 296 0
JFKU01000132 294 0
JFKU01000243 294 0
JFKU01000202 289 0
JFKU01000027 287 0
JFKU01000062 283 0
JFKU01000161 282 0
JFKU01000015 282 0
JFKU01000266 281 0
JFKU01000215 281 0
JFKU01000031 279 0
JFKU01000107 277 0
JFKU01000118 276 0
JFKU01000042 275 0
JFKU01000263 272 0
JFKU01000004 271 0
JFKU01000241 271 0
JFKU01000028 271 0
JFKU01000154 268 0
JFKU01000038 268 0
JFKU01000270 267 0
JFKU01000140 266 0
JFKU01000150 258 0
JFKU01000063 258 0
JFKU01000165 258 0
JFKU01000076 255 0
JFKU01000268 255 0
JFKU01000255 254 0
JFKU01000122 249 0
JFKU01000170 249 0
JFKU01000201 249 0
JFKU01000185 249 0
JFKU01000084 245 0
JFKU01000008 244 0
JFKU01000045 243 0
JFKU01000093 243 0
JFKU01000206 242 0
JFKU01000247 241 0
JFKU01000091 240 0
JFKU01000213 240 0
JFKU01000113 239 0
JFKU01000166 239 0
JFKU01000218 238 0
JFKU01000164 238 0
JFKU01000225 236 0
JFKU01000173 236 0
JFKU01000130 236 0
JFKU01000262 236 0
JFKU01000168 235 0
JFKU01000087 233 0
JFKU01000131 233 0
JFKU01000184 231 0
JFKU01000224 229 0
JFKU01000145 228 0
JFKU01000078 228 0
JFKU01000059 227 0
JFKU01000039 227 0
JFKU01000043 226 0
JFKU01000258 226 0
JFKU01000223 226 0
JFKU01000176 226 0
JFKU01000175 225 0
JFKU01000167 224 0
JFKU01000061 224 0
JFKU01000124 224 0
JFKU01000092 223 0
JFKU01000269 223 0
JFKU01000073 222 0
JFKU01000242 221 0
JFKU01000265 221 0
JFKU01000188 220 0
JFKU01000234 219 0
JFKU01000106 219 0
JFKU01000151 217 0
JFKU01000219 217 0
JFKU01000143 216 0
JFKU01000100 214 0
JFKU01000209 212 0
JFKU01000172 212 0
JFKU01000169 211 0
JFKU01000112 211 0
JFKU01000117 211 0
JFKU01000259 210 0
JFKU01000163 210 0
JFKU01000171 208 0
JFKU01000141 208 0
JFKU01000121 207 0
JFKU01000090 207 0
JFKU01000248 206 0
JFKU01000041 205 0
JFKU01000212 205 0
JFKU01000007 205 0
JFKU01000044 203 0
JFKU01000229 203 0
JFKU01000075 203 0
JFKU01000227 202 0
JFKU01000194 202 0
JFKU01000139 201 0
JFKU01000244 200 0
Total 1,108,552 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000634035.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000634035.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000634035.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000634035.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000634035.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000634035.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000634035.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000634035.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000634035.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000634035.1/genes/interpro.txt (File format)

MicrobeBase