cyanobase » Prochlorococcus sp. scB241_526K3

Prochlorococcus sp. scB241_526K3

Summary

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Data source name GCA_000633995.1
Full name Prochlorococcus sp. scB241_526K3 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKR01000219 276,166 0
JFKR01000138 111,733 0
JFKR01000294 105,893 0
JFKR01000140 95,932 0
JFKR01000139 46,769 0
JFKR01000161 44,881 0
JFKR01000209 43,445 0
JFKR01000437 25,326 0
JFKR01000013 15,254 0
JFKR01000438 13,962 0
JFKR01000298 10,828 0
JFKR01000439 8,891 0
JFKR01000296 8,034 0
JFKR01000130 6,224 0
JFKR01000052 5,565 0
JFKR01000114 5,266 0
JFKR01000136 5,210 0
JFKR01000128 4,314 0
JFKR01000137 4,271 0
JFKR01000115 4,159 0
JFKR01000022 4,116 0
JFKR01000388 4,106 0
JFKR01000116 3,957 0
JFKR01000012 3,809 0
JFKR01000129 3,798 0
JFKR01000297 3,195 0
JFKR01000459 2,841 0
JFKR01000389 2,814 0
JFKR01000451 2,797 0
JFKR01000501 2,783 0
JFKR01000185 2,768 0
JFKR01000250 2,738 0
JFKR01000187 2,517 0
JFKR01000184 2,348 0
JFKR01000162 2,338 0
JFKR01000080 2,154 0
JFKR01000453 1,955 0
JFKR01000292 1,914 0
JFKR01000019 1,904 0
JFKR01000077 1,855 0
JFKR01000330 1,812 0
JFKR01000078 1,808 0
JFKR01000050 1,796 0
JFKR01000291 1,786 0
JFKR01000123 1,769 0
JFKR01000323 1,767 0
JFKR01000295 1,711 0
JFKR01000299 1,651 0
JFKR01000023 1,650 0
JFKR01000106 1,632 0
JFKR01000112 1,631 0
JFKR01000446 1,616 0
JFKR01000079 1,590 0
JFKR01000210 1,524 0
JFKR01000426 1,518 0
JFKR01000126 1,464 0
JFKR01000424 1,462 0
JFKR01000407 1,413 0
JFKR01000026 1,402 0
JFKR01000390 1,387 0
JFKR01000237 1,365 0
JFKR01000028 1,365 0
JFKR01000111 1,322 0
JFKR01000481 1,314 0
JFKR01000074 1,307 0
JFKR01000014 1,282 0
JFKR01000442 1,276 0
JFKR01000422 1,271 0
JFKR01000347 1,261 0
JFKR01000186 1,227 0
JFKR01000386 1,209 0
JFKR01000164 1,183 0
JFKR01000479 1,100 0
JFKR01000486 1,089 0
JFKR01000025 1,086 0
JFKR01000452 1,080 0
JFKR01000322 1,074 0
JFKR01000081 1,069 0
JFKR01000076 1,057 0
JFKR01000441 1,040 0
JFKR01000054 1,029 0
JFKR01000502 1,022 0
JFKR01000300 1,014 0
JFKR01000211 1,009 0
JFKR01000181 1,005 0
JFKR01000466 982 0
JFKR01000198 978 0
JFKR01000051 971 0
JFKR01000168 968 0
JFKR01000423 965 0
JFKR01000202 965 0
JFKR01000359 961 0
JFKR01000021 948 0
JFKR01000188 936 0
JFKR01000084 933 0
JFKR01000145 913 0
JFKR01000180 906 0
JFKR01000110 860 0
JFKR01000201 860 0
JFKR01000428 846 0
JFKR01000260 841 0
JFKR01000146 839 0
JFKR01000154 833 0
JFKR01000499 827 0
JFKR01000478 817 0
JFKR01000195 816 0
JFKR01000034 799 0
JFKR01000214 796 0
JFKR01000519 796 0
JFKR01000165 780 0
JFKR01000490 778 0
JFKR01000020 774 0
JFKR01000086 773 0
JFKR01000480 750 0
JFKR01000361 735 0
JFKR01000238 731 0
JFKR01000331 730 0
JFKR01000290 729 0
JFKR01000017 725 0
JFKR01000425 724 0
JFKR01000483 724 0
JFKR01000082 705 0
JFKR01000520 703 0
JFKR01000047 701 0
JFKR01000044 695 0
JFKR01000031 686 0
JFKR01000448 677 0
JFKR01000040 674 0
JFKR01000511 673 0
JFKR01000364 671 0
JFKR01000199 668 0
JFKR01000075 646 0
JFKR01000067 643 0
JFKR01000264 642 0
JFKR01000232 639 0
JFKR01000056 638 0
JFKR01000266 637 0
JFKR01000058 636 0
JFKR01000471 635 0
JFKR01000072 627 0
JFKR01000313 620 0
JFKR01000033 620 0
JFKR01000485 618 0
JFKR01000011 616 0
JFKR01000510 615 0
JFKR01000319 606 0
JFKR01000173 604 0
JFKR01000454 603 0
JFKR01000200 603 0
JFKR01000122 600 0
JFKR01000035 598 0
JFKR01000159 595 0
JFKR01000484 594 0
JFKR01000333 593 0
JFKR01000226 589 0
JFKR01000385 587 0
JFKR01000167 586 0
JFKR01000043 584 0
JFKR01000064 582 0
JFKR01000327 581 0
JFKR01000223 573 0
JFKR01000283 573 0
JFKR01000037 573 0
JFKR01000117 572 0
JFKR01000261 572 0
JFKR01000101 559 0
JFKR01000443 559 0
JFKR01000394 556 0
JFKR01000151 552 0
JFKR01000027 548 0
JFKR01000149 548 0
JFKR01000489 545 0
JFKR01000335 543 0
JFKR01000328 542 0
JFKR01000160 540 0
JFKR01000039 536 0
JFKR01000241 534 0
JFKR01000131 529 0
JFKR01000521 528 0
JFKR01000430 520 0
JFKR01000109 519 0
JFKR01000314 516 0
JFKR01000046 514 0
JFKR01000045 513 0
JFKR01000157 512 0
JFKR01000236 512 0
JFKR01000121 511 0
JFKR01000024 510 0
JFKR01000049 506 0
JFKR01000205 503 0
JFKR01000522 502 0
JFKR01000329 502 0
JFKR01000332 498 0
JFKR01000204 491 0
JFKR01000248 491 0
JFKR01000309 490 0
JFKR01000220 490 0
JFKR01000487 490 0
JFKR01000321 489 0
JFKR01000225 488 0
JFKR01000066 487 0
JFKR01000449 486 0
JFKR01000208 476 0
JFKR01000070 476 0
JFKR01000508 470 0
JFKR01000093 470 0
JFKR01000233 469 0
JFKR01000036 468 0
JFKR01000252 467 0
JFKR01000234 463 0
JFKR01000254 462 0
JFKR01000326 462 0
JFKR01000262 462 0
JFKR01000276 460 0
JFKR01000103 458 0
JFKR01000153 450 0
JFKR01000089 450 0
JFKR01000352 449 0
JFKR01000125 448 0
JFKR01000194 446 0
JFKR01000301 443 0
JFKR01000258 442 0
JFKR01000287 440 0
JFKR01000275 439 0
JFKR01000360 438 0
JFKR01000431 438 0
JFKR01000392 437 0
JFKR01000060 434 0
JFKR01000396 426 0
JFKR01000482 425 0
JFKR01000010 423 0
JFKR01000197 423 0
JFKR01000336 422 0
JFKR01000324 416 0
JFKR01000189 410 0
JFKR01000150 410 0
JFKR01000417 409 0
JFKR01000083 407 0
JFKR01000473 407 0
JFKR01000343 406 0
JFKR01000042 403 0
JFKR01000493 402 0
JFKR01000113 401 0
JFKR01000315 399 0
JFKR01000274 399 0
JFKR01000348 398 0
JFKR01000256 398 0
JFKR01000085 396 0
JFKR01000282 396 0
JFKR01000346 396 0
JFKR01000447 393 0
JFKR01000203 388 0
JFKR01000355 387 0
JFKR01000311 386 0
JFKR01000464 382 0
JFKR01000279 382 0
JFKR01000357 381 0
JFKR01000399 381 0
JFKR01000255 381 0
JFKR01000178 380 0
JFKR01000494 378 0
JFKR01000444 377 0
JFKR01000318 376 0
JFKR01000120 376 0
JFKR01000147 375 0
JFKR01000406 373 0
JFKR01000404 372 0
JFKR01000216 372 0
JFKR01000373 370 0
JFKR01000182 369 0
JFKR01000104 368 0
JFKR01000251 367 0
JFKR01000273 365 0
JFKR01000370 364 0
JFKR01000344 362 0
JFKR01000514 360 0
JFKR01000061 358 0
JFKR01000156 358 0
JFKR01000207 357 0
JFKR01000105 357 0
JFKR01000069 354 0
JFKR01000334 354 0
JFKR01000191 352 0
JFKR01000445 351 0
JFKR01000221 351 0
JFKR01000349 351 0
JFKR01000419 350 0
JFKR01000513 349 0
JFKR01000265 349 0
JFKR01000497 348 0
JFKR01000523 347 0
JFKR01000212 345 0
JFKR01000382 344 0
JFKR01000230 344 0
JFKR01000235 343 0
JFKR01000029 342 0
JFKR01000018 339 0
JFKR01000415 338 0
JFKR01000271 337 0
JFKR01000108 336 0
JFKR01000455 335 0
JFKR01000387 335 0
JFKR01000506 335 0
JFKR01000179 331 0
JFKR01000196 331 0
JFKR01000354 330 0
JFKR01000408 330 0
JFKR01000004 329 0
JFKR01000338 328 0
JFKR01000340 324 0
JFKR01000015 324 0
JFKR01000285 322 0
JFKR01000246 321 0
JFKR01000038 320 0
JFKR01000505 320 0
JFKR01000242 319 0
JFKR01000213 318 0
JFKR01000284 316 0
JFKR01000218 316 0
JFKR01000374 316 0
JFKR01000512 314 0
JFKR01000288 313 0
JFKR01000062 313 0
JFKR01000158 313 0
JFKR01000134 312 0
JFKR01000393 312 0
JFKR01000007 310 0
JFKR01000278 310 0
JFKR01000100 310 0
JFKR01000002 310 0
JFKR01000470 309 0
JFKR01000391 307 0
JFKR01000507 307 0
JFKR01000249 307 0
JFKR01000127 305 0
JFKR01000310 305 0
JFKR01000456 305 0
JFKR01000421 304 0
JFKR01000410 304 0
JFKR01000353 301 0
JFKR01000308 301 0
JFKR01000337 301 0
JFKR01000286 300 0
JFKR01000488 299 0
JFKR01000166 299 0
JFKR01000245 298 0
JFKR01000257 298 0
JFKR01000094 296 0
JFKR01000088 296 0
JFKR01000381 296 0
JFKR01000087 295 0
JFKR01000316 295 0
JFKR01000345 294 0
JFKR01000057 293 0
JFKR01000302 292 0
JFKR01000325 292 0
JFKR01000467 291 0
JFKR01000119 291 0
JFKR01000183 290 0
JFKR01000133 289 0
JFKR01000440 289 0
JFKR01000380 288 0
JFKR01000515 288 0
JFKR01000270 287 0
JFKR01000305 286 0
JFKR01000518 286 0
JFKR01000107 285 0
JFKR01000379 283 0
JFKR01000405 282 0
JFKR01000427 282 0
JFKR01000063 279 0
JFKR01000433 279 0
JFKR01000350 278 0
JFKR01000303 277 0
JFKR01000030 277 0
JFKR01000420 275 0
JFKR01000193 275 0
JFKR01000293 275 0
JFKR01000097 273 0
JFKR01000289 272 0
JFKR01000227 270 0
JFKR01000229 270 0
JFKR01000342 270 0
JFKR01000132 269 0
JFKR01000496 268 0
JFKR01000492 267 0
JFKR01000071 267 0
JFKR01000509 266 0
JFKR01000280 265 0
JFKR01000095 265 0
JFKR01000177 265 0
JFKR01000403 265 0
JFKR01000429 264 0
JFKR01000377 264 0
JFKR01000192 263 0
JFKR01000068 263 0
JFKR01000432 262 0
JFKR01000356 261 0
JFKR01000152 260 0
JFKR01000065 260 0
JFKR01000383 259 0
JFKR01000411 259 0
JFKR01000091 259 0
JFKR01000398 258 0
JFKR01000384 254 0
JFKR01000259 254 0
JFKR01000099 254 0
JFKR01000003 254 0
JFKR01000409 253 0
JFKR01000397 253 0
JFKR01000215 253 0
JFKR01000339 253 0
JFKR01000351 253 0
JFKR01000170 252 0
JFKR01000317 252 0
JFKR01000016 252 0
JFKR01000090 251 0
JFKR01000281 250 0
JFKR01000358 250 0
JFKR01000102 249 0
JFKR01000175 248 0
JFKR01000142 248 0
JFKR01000312 247 0
JFKR01000362 247 0
JFKR01000413 246 0
JFKR01000365 245 0
JFKR01000500 245 0
JFKR01000174 245 0
JFKR01000375 244 0
JFKR01000176 244 0
JFKR01000009 244 0
JFKR01000135 244 0
JFKR01000224 243 0
JFKR01000268 243 0
JFKR01000418 242 0
JFKR01000376 242 0
JFKR01000498 241 0
JFKR01000458 241 0
JFKR01000247 238 0
JFKR01000263 238 0
JFKR01000096 238 0
JFKR01000206 238 0
JFKR01000457 237 0
JFKR01000277 237 0
JFKR01000144 237 0
JFKR01000053 236 0
JFKR01000402 235 0
JFKR01000005 235 0
JFKR01000048 235 0
JFKR01000098 234 0
JFKR01000008 232 0
JFKR01000450 232 0
JFKR01000412 232 0
JFKR01000495 232 0
JFKR01000304 231 0
JFKR01000475 230 0
JFKR01000006 229 0
JFKR01000190 228 0
JFKR01000469 228 0
JFKR01000368 228 0
JFKR01000118 227 0
JFKR01000055 227 0
JFKR01000462 226 0
JFKR01000341 226 0
JFKR01000143 226 0
JFKR01000124 225 0
JFKR01000363 225 0
JFKR01000400 224 0
JFKR01000001 224 0
JFKR01000217 222 0
JFKR01000468 222 0
JFKR01000228 222 0
JFKR01000463 221 0
JFKR01000434 221 0
JFKR01000155 221 0
JFKR01000414 220 0
JFKR01000461 219 0
JFKR01000465 218 0
JFKR01000253 218 0
JFKR01000032 217 0
JFKR01000366 216 0
JFKR01000148 216 0
JFKR01000073 216 0
JFKR01000369 215 0
JFKR01000244 214 0
JFKR01000059 214 0
JFKR01000092 214 0
JFKR01000169 212 0
JFKR01000491 212 0
JFKR01000171 212 0
JFKR01000320 212 0
JFKR01000163 211 0
JFKR01000516 210 0
JFKR01000476 210 0
JFKR01000239 209 0
JFKR01000306 209 0
JFKR01000307 209 0
JFKR01000041 208 0
JFKR01000517 208 0
JFKR01000141 207 0
JFKR01000504 207 0
JFKR01000372 207 0
JFKR01000435 207 0
JFKR01000378 206 0
JFKR01000474 206 0
JFKR01000371 205 0
JFKR01000395 205 0
JFKR01000477 205 0
JFKR01000472 205 0
JFKR01000267 204 0
JFKR01000460 203 0
JFKR01000269 203 0
JFKR01000401 203 0
JFKR01000222 203 0
JFKR01000436 203 0
JFKR01000231 203 0
JFKR01000243 203 0
JFKR01000367 202 0
JFKR01000272 202 0
JFKR01000240 201 0
JFKR01000172 201 0
JFKR01000416 167 0
JFKR01000503 105 0
Total 1,133,453 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000633995.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000633995.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000633995.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000633995.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000633995.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000633995.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000633995.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000633995.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000633995.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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