cyanobase » Prochlorococcus sp. scB241_526B17

Prochlorococcus sp. scB241_526B17

Summary

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Data source name GCA_000633975.1
Full name Prochlorococcus sp. scB241_526B17 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JFKN01000255 109,260 0
JFKN01000034 106,224 0
JFKN01000312 64,683 0
JFKN01000299 63,196 0
JFKN01000035 55,070 0
JFKN01000033 46,697 0
JFKN01000032 46,633 0
JFKN01000272 44,936 0
JFKN01000231 39,121 0
JFKN01000002 32,543 0
JFKN01000361 30,473 0
JFKN01000007 25,814 0
JFKN01000257 23,574 0
JFKN01000243 22,614 0
JFKN01000300 22,175 0
JFKN01000001 17,604 0
JFKN01000031 16,652 0
JFKN01000365 14,949 0
JFKN01000274 12,529 0
JFKN01000252 11,370 0
JFKN01000036 10,866 0
JFKN01000320 10,407 0
JFKN01000267 9,142 0
JFKN01000256 8,506 0
JFKN01000270 8,103 0
JFKN01000321 8,068 0
JFKN01000230 7,112 0
JFKN01000245 6,469 0
JFKN01000301 4,966 0
JFKN01000362 4,925 0
JFKN01000006 4,908 0
JFKN01000251 4,741 0
JFKN01000323 4,620 0
JFKN01000009 4,512 0
JFKN01000324 4,097 0
JFKN01000275 3,909 0
JFKN01000086 3,801 0
JFKN01000003 3,502 0
JFKN01000331 3,351 0
JFKN01000187 3,172 0
JFKN01000302 2,954 0
JFKN01000268 2,692 0
JFKN01000280 2,561 0
JFKN01000042 2,501 0
JFKN01000298 2,422 0
JFKN01000364 2,265 0
JFKN01000281 2,191 0
JFKN01000004 2,189 0
JFKN01000269 2,102 0
JFKN01000276 2,100 0
JFKN01000253 2,068 0
JFKN01000094 2,043 0
JFKN01000030 1,854 0
JFKN01000296 1,833 0
JFKN01000188 1,788 0
JFKN01000046 1,748 0
JFKN01000085 1,702 0
JFKN01000011 1,659 0
JFKN01000271 1,623 0
JFKN01000192 1,596 0
JFKN01000242 1,460 0
JFKN01000273 1,413 0
JFKN01000332 1,391 0
JFKN01000228 1,343 0
JFKN01000311 1,314 0
JFKN01000044 1,310 0
JFKN01000051 1,165 0
JFKN01000335 1,129 0
JFKN01000173 1,127 0
JFKN01000190 1,122 0
JFKN01000029 1,108 0
JFKN01000258 1,097 0
JFKN01000131 1,087 0
JFKN01000194 1,082 0
JFKN01000284 1,068 0
JFKN01000294 1,065 0
JFKN01000297 1,051 0
JFKN01000288 1,045 0
JFKN01000132 1,019 0
JFKN01000303 1,017 0
JFKN01000285 964 0
JFKN01000113 950 0
JFKN01000378 944 0
JFKN01000005 943 0
JFKN01000260 926 0
JFKN01000180 923 0
JFKN01000199 918 0
JFKN01000176 910 0
JFKN01000040 903 0
JFKN01000154 884 0
JFKN01000263 880 0
JFKN01000197 863 0
JFKN01000041 852 0
JFKN01000049 832 0
JFKN01000117 809 0
JFKN01000010 801 0
JFKN01000092 794 0
JFKN01000293 788 0
JFKN01000342 770 0
JFKN01000363 738 0
JFKN01000333 735 0
JFKN01000008 733 0
JFKN01000262 729 0
JFKN01000356 728 0
JFKN01000024 721 0
JFKN01000366 721 0
JFKN01000359 719 0
JFKN01000375 710 0
JFKN01000054 692 0
JFKN01000249 687 0
JFKN01000193 686 0
JFKN01000259 676 0
JFKN01000115 671 0
JFKN01000198 667 0
JFKN01000236 667 0
JFKN01000144 657 0
JFKN01000292 650 0
JFKN01000357 636 0
JFKN01000233 624 0
JFKN01000206 619 0
JFKN01000026 619 0
JFKN01000093 617 0
JFKN01000196 615 0
JFKN01000185 607 0
JFKN01000174 605 0
JFKN01000229 604 0
JFKN01000282 601 0
JFKN01000189 600 0
JFKN01000307 598 0
JFKN01000099 597 0
JFKN01000045 596 0
JFKN01000146 595 0
JFKN01000130 593 0
JFKN01000181 581 0
JFKN01000306 568 0
JFKN01000264 566 0
JFKN01000102 561 0
JFKN01000325 559 0
JFKN01000340 542 0
JFKN01000346 535 0
JFKN01000096 529 0
JFKN01000158 524 0
JFKN01000347 521 0
JFKN01000314 518 0
JFKN01000217 509 0
JFKN01000211 508 0
JFKN01000250 504 0
JFKN01000142 498 0
JFKN01000319 494 0
JFKN01000088 492 0
JFKN01000186 490 0
JFKN01000207 488 0
JFKN01000119 487 0
JFKN01000082 487 0
JFKN01000223 484 0
JFKN01000195 475 0
JFKN01000279 472 0
JFKN01000238 461 0
JFKN01000295 460 0
JFKN01000237 449 0
JFKN01000183 446 0
JFKN01000060 446 0
JFKN01000157 442 0
JFKN01000133 441 0
JFKN01000149 438 0
JFKN01000128 434 0
JFKN01000202 426 0
JFKN01000326 425 0
JFKN01000062 424 0
JFKN01000234 423 0
JFKN01000135 423 0
JFKN01000019 418 0
JFKN01000118 415 0
JFKN01000087 413 0
JFKN01000224 412 0
JFKN01000143 412 0
JFKN01000201 411 0
JFKN01000164 409 0
JFKN01000047 405 0
JFKN01000310 405 0
JFKN01000353 405 0
JFKN01000277 404 0
JFKN01000057 399 0
JFKN01000091 399 0
JFKN01000097 398 0
JFKN01000103 397 0
JFKN01000344 394 0
JFKN01000308 388 0
JFKN01000120 387 0
JFKN01000213 382 0
JFKN01000020 380 0
JFKN01000156 379 0
JFKN01000360 375 0
JFKN01000179 373 0
JFKN01000064 372 0
JFKN01000112 372 0
JFKN01000083 368 0
JFKN01000129 366 0
JFKN01000165 365 0
JFKN01000172 365 0
JFKN01000065 361 0
JFKN01000367 361 0
JFKN01000016 360 0
JFKN01000247 360 0
JFKN01000141 359 0
JFKN01000286 359 0
JFKN01000317 359 0
JFKN01000052 359 0
JFKN01000339 357 0
JFKN01000168 352 0
JFKN01000055 350 0
JFKN01000148 349 0
JFKN01000240 347 0
JFKN01000074 347 0
JFKN01000343 345 0
JFKN01000166 345 0
JFKN01000175 344 0
JFKN01000200 343 0
JFKN01000289 343 0
JFKN01000038 341 0
JFKN01000078 341 0
JFKN01000137 339 0
JFKN01000021 337 0
JFKN01000318 335 0
JFKN01000014 332 0
JFKN01000101 331 0
JFKN01000178 330 0
JFKN01000079 330 0
JFKN01000336 329 0
JFKN01000136 328 0
JFKN01000018 327 0
JFKN01000147 326 0
JFKN01000013 326 0
JFKN01000140 323 0
JFKN01000371 322 0
JFKN01000316 322 0
JFKN01000309 322 0
JFKN01000355 319 0
JFKN01000244 316 0
JFKN01000027 316 0
JFKN01000090 316 0
JFKN01000305 315 0
JFKN01000070 315 0
JFKN01000315 315 0
JFKN01000241 312 0
JFKN01000072 312 0
JFKN01000160 310 0
JFKN01000048 310 0
JFKN01000248 308 0
JFKN01000098 308 0
JFKN01000028 308 0
JFKN01000152 306 0
JFKN01000123 305 0
JFKN01000290 302 0
JFKN01000151 301 0
JFKN01000107 301 0
JFKN01000114 300 0
JFKN01000025 300 0
JFKN01000322 299 0
JFKN01000110 297 0
JFKN01000058 297 0
JFKN01000167 295 0
JFKN01000329 295 0
JFKN01000109 295 0
JFKN01000330 294 0
JFKN01000068 292 0
JFKN01000214 292 0
JFKN01000037 291 0
JFKN01000203 291 0
JFKN01000334 290 0
JFKN01000313 286 0
JFKN01000184 284 0
JFKN01000138 283 0
JFKN01000081 283 0
JFKN01000127 283 0
JFKN01000155 280 0
JFKN01000266 279 0
JFKN01000017 279 0
JFKN01000225 278 0
JFKN01000352 275 0
JFKN01000061 274 0
JFKN01000084 273 0
JFKN01000376 272 0
JFKN01000283 271 0
JFKN01000349 271 0
JFKN01000108 271 0
JFKN01000153 269 0
JFKN01000210 269 0
JFKN01000043 269 0
JFKN01000182 268 0
JFKN01000106 266 0
JFKN01000226 266 0
JFKN01000104 265 0
JFKN01000222 264 0
JFKN01000126 263 0
JFKN01000261 262 0
JFKN01000063 262 0
JFKN01000056 261 0
JFKN01000338 261 0
JFKN01000345 260 0
JFKN01000278 260 0
JFKN01000023 259 0
JFKN01000053 259 0
JFKN01000139 258 0
JFKN01000374 258 0
JFKN01000215 256 0
JFKN01000161 255 0
JFKN01000077 251 0
JFKN01000220 251 0
JFKN01000373 247 0
JFKN01000350 247 0
JFKN01000204 246 0
JFKN01000337 245 0
JFKN01000287 244 0
JFKN01000177 244 0
JFKN01000066 241 0
JFKN01000246 239 0
JFKN01000150 238 0
JFKN01000122 238 0
JFKN01000039 237 0
JFKN01000368 237 0
JFKN01000358 234 0
JFKN01000239 234 0
JFKN01000171 234 0
JFKN01000089 233 0
JFKN01000304 232 0
JFKN01000377 232 0
JFKN01000159 231 0
JFKN01000059 230 0
JFKN01000069 230 0
JFKN01000124 230 0
JFKN01000169 230 0
JFKN01000105 229 0
JFKN01000219 229 0
JFKN01000080 228 0
JFKN01000232 228 0
JFKN01000209 227 0
JFKN01000050 225 0
JFKN01000212 224 0
JFKN01000162 223 0
JFKN01000145 221 0
JFKN01000116 218 0
JFKN01000015 217 0
JFKN01000073 216 0
JFKN01000254 215 0
JFKN01000351 214 0
JFKN01000100 213 0
JFKN01000125 212 0
JFKN01000191 212 0
JFKN01000291 211 0
JFKN01000012 211 0
JFKN01000327 210 0
JFKN01000170 210 0
JFKN01000227 209 0
JFKN01000218 209 0
JFKN01000216 209 0
JFKN01000163 209 0
JFKN01000075 209 0
JFKN01000221 208 0
JFKN01000067 208 0
JFKN01000348 207 0
JFKN01000235 206 0
JFKN01000208 205 0
JFKN01000205 204 0
JFKN01000134 204 0
JFKN01000095 204 0
JFKN01000076 203 0
JFKN01000022 203 0
JFKN01000265 203 0
JFKN01000354 203 0
JFKN01000370 202 0
JFKN01000372 202 0
JFKN01000071 202 0
JFKN01000111 201 0
JFKN01000121 201 0
JFKN01000369 201 0
JFKN01000341 200 0
JFKN01000328 200 0
Total 1,107,739 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000633975.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000633975.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000633975.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000633975.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000633975.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000633975.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000633975.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000633975.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000633975.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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