cyanobase » Candidatus Synechococcus spongiarum SH4

Candidatus Synechococcus spongiarum SH4

Summary

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Data source name GCA_000586015.1
Full name Candidatus Synechococcus spongiarum SH4 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JENA01000001 33,601 0
JENA01000002 26,660 0
JENA01000003 22,170 0
JENA01000004 21,123 0
JENA01000005 20,534 0
JENA01000006 19,923 0
JENA01000007 19,679 0
JENA01000008 18,696 0
JENA01000009 18,512 0
JENA01000010 17,195 0
JENA01000011 17,176 0
JENA01000012 15,913 0
JENA01000013 15,598 0
JENA01000014 15,084 0
JENA01000015 14,618 0
JENA01000017 14,251 0
JENA01000016 14,247 0
JENA01000018 13,940 0
JENA01000019 13,631 0
JENA01000020 13,359 0
JENA01000021 13,207 0
JENA01000022 13,068 0
JENA01000023 13,000 0
JENA01000024 12,845 0
JENA01000025 12,655 0
JENA01000027 12,313 0
JENA01000026 12,312 0
JENA01000028 11,763 0
JENA01000029 11,739 0
JENA01000030 11,576 0
JENA01000031 11,436 0
JENA01000032 11,270 0
JENA01000033 11,244 0
JENA01000034 10,963 0
JENA01000035 10,915 0
JENA01000036 10,690 0
JENA01000037 10,620 0
JENA01000038 10,576 0
JENA01000039 10,099 0
JENA01000040 9,986 0
JENA01000041 9,973 0
JENA01000042 9,926 0
JENA01000043 9,879 0
JENA01000044 9,713 0
JENA01000045 9,643 0
JENA01000046 9,636 0
JENA01000047 9,492 0
JENA01000048 9,353 0
JENA01000049 9,224 0
JENA01000050 9,114 0
JENA01000051 8,930 0
JENA01000052 8,907 0
JENA01000053 8,801 0
JENA01000054 8,768 0
JENA01000055 8,625 0
JENA01000056 8,539 0
JENA01000057 8,502 0
JENA01000058 8,304 0
JENA01000059 8,265 0
JENA01000060 8,256 0
JENA01000061 8,195 0
JENA01000062 8,148 0
JENA01000063 8,098 0
JENA01000064 8,038 0
JENA01000065 8,036 0
JENA01000066 7,995 0
JENA01000067 7,835 0
JENA01000068 7,790 0
JENA01000069 7,726 0
JENA01000070 7,522 0
JENA01000071 7,515 0
JENA01000072 7,430 0
JENA01000073 7,315 0
JENA01000074 7,108 0
JENA01000075 7,066 0
JENA01000076 7,061 0
JENA01000077 7,010 0
JENA01000078 6,903 0
JENA01000079 6,861 0
JENA01000080 6,825 0
JENA01000081 6,808 0
JENA01000082 6,786 0
JENA01000083 6,752 0
JENA01000084 6,751 0
JENA01000085 6,534 0
JENA01000086 6,493 0
JENA01000087 6,341 0
JENA01000088 6,234 0
JENA01000089 6,219 0
JENA01000090 6,127 0
JENA01000091 6,085 0
JENA01000092 6,058 0
JENA01000093 5,997 0
JENA01000094 5,940 0
JENA01000096 5,924 0
JENA01000095 5,920 0
JENA01000097 5,817 0
JENA01000098 5,782 0
JENA01000099 5,731 0
JENA01000100 5,667 0
JENA01000101 5,618 0
JENA01000102 5,570 0
JENA01000103 5,496 0
JENA01000104 5,479 0
JENA01000105 5,420 0
JENA01000106 5,420 0
JENA01000107 5,407 0
JENA01000108 5,364 0
JENA01000109 5,306 0
JENA01000110 5,271 0
JENA01000111 5,256 0
JENA01000112 5,244 0
JENA01000113 5,201 0
JENA01000114 5,187 0
JENA01000115 5,163 0
JENA01000116 5,108 0
JENA01000117 5,076 0
JENA01000118 5,067 0
JENA01000120 5,054 0
JENA01000119 5,053 0
JENA01000121 5,001 0
JENA01000122 4,977 0
JENA01000123 4,967 0
JENA01000124 4,932 0
JENA01000125 4,828 0
JENA01000126 4,806 0
JENA01000127 4,789 0
JENA01000128 4,768 0
JENA01000129 4,750 0
JENA01000130 4,746 0
JENA01000131 4,728 0
JENA01000132 4,724 0
JENA01000133 4,718 0
JENA01000134 4,683 0
JENA01000135 4,609 0
JENA01000136 4,607 0
JENA01000137 4,570 0
JENA01000138 4,542 0
JENA01000139 4,502 0
JENA01000140 4,498 0
JENA01000141 4,441 0
JENA01000142 4,432 0
JENA01000143 4,401 0
JENA01000144 4,349 0
JENA01000145 4,336 0
JENA01000146 4,319 0
JENA01000147 4,247 0
JENA01000148 4,245 0
JENA01000149 4,227 0
JENA01000150 4,227 0
JENA01000151 4,174 0
JENA01000152 4,161 0
JENA01000153 4,142 0
JENA01000154 4,076 0
JENA01000155 4,074 0
JENA01000156 4,015 0
JENA01000157 4,012 0
JENA01000158 4,002 0
JENA01000159 3,957 0
JENA01000160 3,901 0
JENA01000161 3,872 0
JENA01000162 3,861 0
JENA01000163 3,850 0
JENA01000164 3,848 0
JENA01000165 3,840 0
JENA01000166 3,825 0
JENA01000168 3,810 0
JENA01000167 3,807 0
JENA01000169 3,765 0
JENA01000170 3,689 0
JENA01000171 3,661 0
JENA01000172 3,584 0
JENA01000173 3,572 0
JENA01000174 3,560 0
JENA01000175 3,558 0
JENA01000176 3,529 0
JENA01000177 3,486 0
JENA01000178 3,472 0
JENA01000179 3,453 0
JENA01000180 3,440 0
JENA01000181 3,396 0
JENA01000182 3,358 0
JENA01000183 3,356 0
JENA01000184 3,335 0
JENA01000185 3,329 0
JENA01000186 3,279 0
JENA01000187 3,205 0
JENA01000188 3,174 0
JENA01000189 3,153 0
JENA01000190 3,144 0
JENA01000191 3,112 0
JENA01000192 3,104 0
JENA01000193 3,100 0
JENA01000194 3,090 0
JENA01000195 3,082 0
JENA01000196 3,029 0
JENA01000197 3,011 0
JENA01000198 2,999 0
JENA01000199 2,975 0
JENA01000200 2,969 0
JENA01000201 2,963 0
JENA01000202 2,945 0
JENA01000203 2,926 0
JENA01000204 2,921 0
JENA01000205 2,920 0
JENA01000206 2,914 0
JENA01000207 2,913 0
JENA01000208 2,889 0
JENA01000209 2,872 0
JENA01000210 2,866 0
JENA01000212 2,866 0
JENA01000211 2,865 0
JENA01000214 2,851 0
JENA01000213 2,849 0
JENA01000215 2,842 0
JENA01000216 2,808 0
JENA01000217 2,790 0
JENA01000218 2,786 0
JENA01000219 2,746 0
JENA01000220 2,732 0
JENA01000221 2,722 0
JENA01000222 2,700 0
JENA01000223 2,695 0
JENA01000224 2,689 0
JENA01000225 2,681 0
JENA01000226 2,648 0
JENA01000227 2,643 0
JENA01000228 2,627 0
JENA01000229 2,608 0
JENA01000230 2,576 0
JENA01000231 2,559 0
JENA01000232 2,546 0
JENA01000233 2,543 0
JENA01000234 2,538 0
JENA01000235 2,509 0
JENA01000236 2,474 0
JENA01000237 2,468 0
JENA01000238 2,466 0
JENA01000239 2,438 0
JENA01000240 2,433 0
JENA01000241 2,426 0
JENA01000242 2,411 0
JENA01000243 2,401 0
JENA01000244 2,389 0
JENA01000245 2,386 0
JENA01000246 2,384 0
JENA01000247 2,379 0
JENA01000248 2,379 0
JENA01000249 2,369 0
JENA01000250 2,352 0
JENA01000251 2,348 0
JENA01000252 2,347 0
JENA01000254 2,305 0
JENA01000253 2,301 0
JENA01000255 2,287 0
JENA01000256 2,279 0
JENA01000257 2,271 0
JENA01000258 2,257 0
JENA01000260 2,255 0
JENA01000259 2,253 0
JENA01000261 2,245 0
JENA01000262 2,238 0
JENA01000263 2,213 0
JENA01000264 2,168 0
JENA01000265 2,146 0
JENA01000266 2,139 0
JENA01000267 2,117 0
JENA01000268 2,114 0
JENA01000269 2,106 0
JENA01000270 2,098 0
JENA01000271 2,056 0
JENA01000272 2,055 0
JENA01000273 2,003 0
Total 1,658,709 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000586015.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000586015.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000586015.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000586015.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000586015.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000586015.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000586015.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000586015.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000586015.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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