cyanobase » Fischerella sp. PCC 9605

Fischerella sp. PCC 9605

Summary

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Data source name GCA_000517105.1
Full name Fischerella sp. PCC 9605 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Fischerella.

Genome Information

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Chromosomes
Name Size (bp) Genes
KI912148 2,910,489 0
KI912149 1,950,001 0
KI912151 1,136,461 0
KI912152 451,483 0
ALVT01000034 429,688 0
KI912154 388,730 0
KI912150 378,745 0
KI912153 361,506 0
ALVT01000033 32,670 0
ALVT01000030 26,619 0
ALVT01000032 10,828 0
ALVT01000031 1,961 0
Total 8,079,181 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000517105.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000517105.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000517105.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000517105.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000517105.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000517105.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000517105.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000517105.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000517105.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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