cyanobase » Synechococcus sp. NKBG15041c

Synechococcus sp. NKBG15041c

Summary

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Data source name GCA_000485815.1
Full name Synechococcus sp. NKBG15041c External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
BAUB01000001 371,623 0
BAUB01000002 342,197 0
BAUB01000003 315,291 0
BAUB01000004 206,865 0
BAUB01000005 191,038 0
BAUB01000006 168,293 0
BAUB01000007 155,397 0
BAUB01000008 155,010 0
BAUB01000009 152,309 0
BAUB01000010 91,939 0
BAUB01000011 73,392 0
BAUB01000012 72,201 0
BAUB01000013 67,954 0
BAUB01000014 63,065 0
BAUB01000015 60,708 0
BAUB01000016 58,988 0
BAUB01000017 58,941 0
BAUB01000018 58,904 0
BAUB01000019 54,929 0
BAUB01000020 49,361 0
BAUB01000021 49,166 0
BAUB01000022 48,822 0
BAUB01000023 48,197 0
BAUB01000024 42,944 0
BAUB01000025 25,550 0
BAUB01000026 24,898 0
BAUB01000027 22,437 0
BAUB01000028 20,219 0
BAUB01000029 19,329 0
BAUB01000030 16,598 0
BAUB01000031 16,120 0
BAUB01000032 14,419 0
BAUB01000033 14,361 0
BAUB01000034 10,453 0
BAUB01000035 9,025 0
BAUB01000036 9,021 0
BAUB01000037 5,384 0
BAUB01000038 4,901 0
BAUB01000039 4,391 0
BAUB01000040 2,116 0
BAUB01000041 1,004 0
BAUB01000042 953 0
BAUB01000043 723 0
BAUB01000044 607 0
Total 3,180,043 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000485815.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000485815.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000485815.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000485815.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000485815.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000485815.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000485815.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000485815.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000485815.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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