cyanobase » Leptolyngbya sp. Heron Island J

Leptolyngbya sp. Heron Island J

Summary

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Data source name GCA_000482245.1
Full name Leptolyngbya sp. Heron Island J External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.

Genome Information

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Chromosomes
Name Size (bp) Genes
AWNH01000115 346,540 309
AWNH01000112 313,227 256
AWNH01000014 257,625 236
AWNH01000060 225,345 201
AWNH01000106 220,691 214
AWNH01000012 208,660 208
AWNH01000008 199,078 153
AWNH01000036 197,419 180
AWNH01000071 189,288 180
AWNH01000070 181,556 165
AWNH01000043 179,767 140
AWNH01000053 170,314 141
AWNH01000117 151,157 133
AWNH01000103 148,999 129
AWNH01000078 146,216 137
AWNH01000105 134,037 120
AWNH01000098 127,950 123
AWNH01000038 123,116 104
AWNH01000045 117,831 112
AWNH01000015 112,752 118
AWNH01000022 107,423 93
AWNH01000095 106,894 74
AWNH01000021 103,122 113
AWNH01000047 102,956 88
AWNH01000080 101,962 95
AWNH01000075 97,934 91
AWNH01000040 91,966 75
AWNH01000005 90,443 90
AWNH01000046 87,855 84
AWNH01000006 87,533 72
AWNH01000084 85,834 68
AWNH01000059 85,636 96
AWNH01000041 77,868 63
AWNH01000039 77,845 80
AWNH01000024 76,389 72
AWNH01000013 76,140 74
AWNH01000011 75,819 66
AWNH01000019 75,712 74
AWNH01000031 74,176 65
AWNH01000113 72,477 55
AWNH01000057 71,848 57
AWNH01000079 70,830 75
AWNH01000066 68,419 56
AWNH01000096 67,915 58
AWNH01000049 65,050 50
AWNH01000034 62,644 51
AWNH01000023 61,148 56
AWNH01000109 58,437 44
AWNH01000017 56,472 57
AWNH01000063 56,172 49
AWNH01000030 54,700 43
AWNH01000032 54,462 55
AWNH01000097 54,236 33
AWNH01000085 52,360 49
AWNH01000016 51,878 56
AWNH01000090 51,838 43
AWNH01000094 49,194 50
AWNH01000069 48,946 54
AWNH01000101 48,721 27
AWNH01000010 48,347 44
AWNH01000025 47,813 53
AWNH01000108 45,562 36
AWNH01000072 45,123 47
AWNH01000074 45,041 41
AWNH01000092 44,854 32
AWNH01000073 44,102 40
AWNH01000044 42,306 43
AWNH01000056 38,230 34
AWNH01000068 37,573 36
AWNH01000058 36,262 13
AWNH01000111 33,768 46
AWNH01000110 33,688 26
AWNH01000026 32,746 35
AWNH01000089 31,267 25
AWNH01000055 31,204 39
AWNH01000037 29,602 23
AWNH01000004 29,233 35
AWNH01000051 28,870 30
AWNH01000104 28,801 25
AWNH01000020 28,674 32
AWNH01000118 28,399 29
AWNH01000007 28,219 23
AWNH01000018 27,973 22
AWNH01000087 27,855 22
AWNH01000064 27,029 28
AWNH01000027 26,744 36
AWNH01000081 25,627 22
AWNH01000086 24,858 24
AWNH01000061 23,282 18
AWNH01000003 22,046 15
AWNH01000114 21,315 28
AWNH01000001 20,657 19
AWNH01000065 20,458 20
AWNH01000067 20,137 21
AWNH01000062 19,428 22
AWNH01000033 17,618 10
AWNH01000077 17,561 16
AWNH01000028 16,959 15
AWNH01000052 16,696 11
AWNH01000100 15,895 15
AWNH01000054 15,351 11
AWNH01000076 13,808 13
AWNH01000093 13,528 13
AWNH01000035 13,437 11
AWNH01000107 13,350 14
AWNH01000042 12,849 19
AWNH01000029 12,239 16
AWNH01000102 11,825 8
AWNH01000091 11,511 15
AWNH01000082 11,464 14
AWNH01000048 11,113 12
AWNH01000088 10,789 13
AWNH01000083 10,788 13
AWNH01000116 10,564 6
AWNH01000050 10,466 11
AWNH01000002 10,234 6
AWNH01000099 10,081 7
AWNH01000119 8,554 11
AWNH01000009 7,573 7
Total 8,064,168 7,281
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000482245.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000482245.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000482245.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000482245.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000482245.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000482245.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000482245.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000482245.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000482245.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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