cyanobase » Lyngbya aestuarii BL J

Lyngbya aestuarii BL J

Summary

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Data source name GCA_000478195.2
Full name Lyngbya aestuarii BL J External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.

Genome Information

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Chromosomes
Name Size (bp) Genes
AUZM01000001 248,421 237
AUZM01000002 200,446 202
AUZM01000003 193,525 185
AUZM01000004 182,011 166
AUZM01000005 158,492 153
AUZM01000006 156,570 137
AUZM01000007 134,657 127
AUZM01000008 132,816 130
AUZM01000009 130,934 122
AUZM01000010 123,252 115
AUZM01000011 118,042 106
AUZM01000012 113,243 100
AUZM01000013 111,421 80
AUZM01000014 109,351 85
AUZM01000015 109,236 91
AUZM01000016 103,542 114
AUZM01000017 102,024 95
AUZM01000018 97,560 67
AUZM01000019 97,362 98
AUZM01000020 93,139 91
AUZM01000021 91,622 92
AUZM01000022 90,304 89
AUZM01000023 86,223 74
AUZM01000024 84,752 88
AUZM01000025 83,756 75
AUZM01000026 80,423 73
AUZM01000027 79,042 63
AUZM01000028 76,381 71
AUZM01000029 73,443 70
AUZM01000030 73,272 71
AUZM01000031 71,037 41
AUZM01000032 70,671 68
AUZM01000033 70,092 48
AUZM01000034 65,596 62
AUZM01000035 63,744 55
AUZM01000036 61,784 56
AUZM01000037 61,062 77
AUZM01000038 60,686 65
AUZM01000039 60,402 56
AUZM01000040 59,219 60
AUZM01000041 57,771 49
AUZM01000042 57,024 47
AUZM01000043 52,913 53
AUZM01000044 51,650 61
AUZM01000045 51,453 44
AUZM01000046 48,808 43
AUZM01000047 48,589 45
AUZM01000048 48,287 44
AUZM01000049 47,920 44
AUZM01000050 46,737 56
AUZM01000051 46,386 42
AUZM01000052 46,111 42
AUZM01000053 45,573 42
AUZM01000054 41,177 46
AUZM01000055 38,621 43
AUZM01000056 38,191 44
AUZM01000057 38,003 8
AUZM01000058 37,954 38
AUZM01000059 37,568 33
AUZM01000060 37,158 41
AUZM01000061 36,817 32
AUZM01000062 36,524 35
AUZM01000063 34,539 30
AUZM01000064 34,347 41
AUZM01000065 31,739 31
AUZM01000066 31,701 19
AUZM01000067 30,814 33
AUZM01000068 30,679 21
AUZM01000069 30,126 32
AUZM01000070 30,034 28
AUZM01000071 29,712 34
AUZM01000072 28,542 28
AUZM01000073 28,428 22
AUZM01000074 26,727 25
AUZM01000075 26,379 24
AUZM01000076 26,230 20
AUZM01000077 26,196 23
AUZM01000078 25,631 25
AUZM01000079 25,627 22
AUZM01000080 25,402 22
AUZM01000081 25,099 30
AUZM01000082 24,731 23
AUZM01000083 24,381 18
AUZM01000084 24,339 25
AUZM01000085 23,489 27
AUZM01000086 22,699 19
AUZM01000087 22,122 23
AUZM01000088 21,903 20
AUZM01000089 20,964 20
AUZM01000090 20,775 18
AUZM01000091 20,651 21
AUZM01000092 20,308 19
AUZM01000093 20,022 13
AUZM01000094 18,939 20
AUZM01000095 18,920 20
AUZM01000096 18,872 19
AUZM01000097 18,832 20
AUZM01000098 17,463 14
AUZM01000099 17,025 15
AUZM01000100 16,755 12
AUZM01000101 16,235 15
AUZM01000102 16,149 14
AUZM01000103 16,051 13
AUZM01000104 16,010 11
AUZM01000105 15,301 12
AUZM01000106 15,116 15
AUZM01000107 14,943 23
AUZM01000108 14,844 15
AUZM01000109 14,666 11
AUZM01000110 14,455 11
AUZM01000111 14,327 16
AUZM01000112 14,282 15
AUZM01000113 14,149 14
AUZM01000114 13,720 15
AUZM01000115 13,385 20
AUZM01000116 13,147 14
AUZM01000117 12,994 8
AUZM01000118 12,619 11
AUZM01000119 11,720 13
AUZM01000120 11,557 4
AUZM01000121 11,405 3
AUZM01000122 10,945 9
AUZM01000123 10,679 10
AUZM01000124 10,112 10
AUZM01000125 9,398 10
AUZM01000126 9,245 11
AUZM01000127 8,318 7
AUZM01000128 8,217 8
AUZM01000129 8,125 9
AUZM01000130 7,434 2
AUZM01000131 7,399 14
AUZM01000132 7,119 6
AUZM01000133 6,815 7
AUZM01000134 6,501 8
AUZM01000135 6,447 2
AUZM01000136 6,318 5
AUZM01000137 6,288 8
AUZM01000138 6,224 5
AUZM01000139 6,195 6
AUZM01000140 6,045 4
AUZM01000141 6,014 4
AUZM01000143 5,797 7
AUZM01000144 4,968 3
AUZM01000145 4,843 5
AUZM01000146 4,709 3
AUZM01000147 3,626 3
AUZM01000148 3,507 4
AUZM01000149 3,496 4
AUZM01000150 3,407 3
AUZM01000151 3,190 2
AUZM01000152 3,138 3
AUZM01000153 2,998 1
AUZM01000154 2,910 3
AUZM01000155 2,907 2
AUZM01000156 2,739 3
AUZM01000157 2,726 1
AUZM01000158 2,681 4
AUZM01000159 2,465 7
AUZM01000160 2,423 3
AUZM01000161 2,263 1
AUZM01000162 2,150 3
AUZM01000163 2,058 4
AUZM01000164 2,047 2
AUZM01000165 2,047 2
AUZM01000166 2,047 2
AUZM01000167 2,047 3
AUZM01000168 2,047 3
AUZM01000169 2,030 4
AUZM01000170 2,028 4
AUZM01000171 2,015 2
AUZM01000172 2,015 3
AUZM01000173 2,010 4
AUZM01000174 2,006 1
AUZM01000175 2,006 2
AUZM01000176 2,003 2
AUZM01000177 2,001 4
AUZM01000178 2,000 4
AUZM01000179 1,951 1
AUZM01000180 1,880 2
AUZM01000181 1,818 1
AUZM01000182 1,775 2
AUZM01000183 1,759 2
AUZM01000184 1,734 2
AUZM01000185 1,732 4
AUZM01000186 1,725 3
AUZM01000187 1,721 3
AUZM01000188 1,709 1
AUZM01000189 1,695 3
AUZM01000190 1,690 3
AUZM01000191 1,683 2
AUZM01000192 1,674 2
AUZM01000193 1,673 2
AUZM01000194 1,582 1
AUZM01000195 1,572 2
AUZM01000196 1,564 2
AUZM01000197 1,541 3
AUZM01000198 1,531 2
AUZM01000199 1,519 1
AUZM01000200 1,506 3
AUZM01000201 1,464 2
AUZM01000202 1,449 1
AUZM01000203 1,449 2
AUZM01000204 1,443 1
AUZM01000205 1,416 3
AUZM01000206 1,395 2
AUZM01000207 1,392 1
AUZM01000208 1,391 1
AUZM01000209 1,378 1
AUZM01000210 1,364 3
AUZM01000211 1,359 2
AUZM01000212 1,357 2
AUZM01000213 1,353 2
AUZM01000214 1,353 2
AUZM01000215 1,352 2
AUZM01000216 1,342 2
AUZM01000217 1,340 2
AUZM01000218 1,295 2
AUZM01000219 1,288 2
AUZM01000220 1,281 2
AUZM01000221 1,274 2
AUZM01000222 1,258 1
AUZM01000223 1,244 2
AUZM01000224 1,227 1
AUZM01000225 1,226 1
AUZM01000226 1,213 1
AUZM01000227 1,190 2
AUZM01000228 1,183 3
AUZM01000229 1,173 1
AUZM01000230 1,159 2
AUZM01000231 1,148 1
AUZM01000232 1,145 2
AUZM01000233 1,143 1
AUZM01000234 1,137 1
AUZM01000235 1,129 2
AUZM01000236 1,119 2
AUZM01000237 1,115 3
AUZM01000238 1,096 1
AUZM01000239 1,090 2
AUZM01000240 1,084 2
AUZM01000241 1,081 2
AUZM01000242 1,078 2
AUZM01000243 1,074 3
AUZM01000244 1,074 2
AUZM01000245 1,072 1
AUZM01000246 1,061 1
AUZM01000247 1,059 2
AUZM01000248 1,057 2
AUZM01000249 1,049 2
AUZM01000250 1,015 1
AUZM01000251 998 2
AUZM01000252 996 1
AUZM01000253 992 2
AUZM01000254 989 2
AUZM01000255 972 1
AUZM01000256 951 1
AUZM01000257 945 1
AUZM01000258 944 1
AUZM01000259 938 2
AUZM01000260 932 3
AUZM01000261 930 1
AUZM01000262 930 1
AUZM01000263 928 1
AUZM01000264 923 1
AUZM01000265 918 2
AUZM01000266 915 3
AUZM01000267 907 2
AUZM01000268 903 3
AUZM01000269 891 1
AUZM01000270 877 1
AUZM01000271 876 1
AUZM01000272 872 1
AUZM01000273 866 2
AUZM01000274 864 1
AUZM01000275 863 2
AUZM01000276 863 2
AUZM01000277 859 1
AUZM01000278 852 2
AUZM01000279 843 3
AUZM01000280 842 2
AUZM01000281 839 2
AUZM01000282 835 2
AUZM01000283 833 3
AUZM01000284 832 1
AUZM01000285 819 1
AUZM01000286 815 2
AUZM01000287 812 2
AUZM01000288 810 2
AUZM01000289 809 2
AUZM01000290 780 1
AUZM01000291 765 1
AUZM01000292 760 1
AUZM01000293 756 2
AUZM01000294 751 1
AUZM01000295 750 1
AUZM01000296 750 1
AUZM01000297 742 1
AUZM01000298 728 2
AUZM01000299 727 1
AUZM01000300 724 2
AUZM01000301 724 1
AUZM01000302 722 1
AUZM01000303 721 2
AUZM01000304 719 1
AUZM01000305 719 1
AUZM01000306 715 2
AUZM01000307 715 1
AUZM01000308 713 1
AUZM01000309 710 1
AUZM01000310 707 1
AUZM01000311 689 2
AUZM01000312 685 1
AUZM01000313 683 1
AUZM01000314 680 2
AUZM01000315 670 2
AUZM01000316 668 1
AUZM01000317 667 1
AUZM01000318 666 1
AUZM01000319 658 1
AUZM01000320 656 2
AUZM01000321 645 1
AUZM01000322 631 1
AUZM01000323 629 1
AUZM01000324 618 1
AUZM01000325 617 1
AUZM01000326 609 1
AUZM01000327 604 1
AUZM01000328 603 3
AUZM01000329 596 0
AUZM01000330 587 1
AUZM01000331 586 1
AUZM01000332 585 1
AUZM01000333 576 2
AUZM01000334 570 1
AUZM01000335 567 1
AUZM01000336 565 2
AUZM01000337 565 2
AUZM01000338 558 1
AUZM01000339 555 1
AUZM01000340 546 1
AUZM01000341 538 2
AUZM01000342 537 0
AUZM01000343 535 1
AUZM01000344 530 1
AUZM01000345 519 1
AUZM01000346 517 1
AUZM01000347 516 1
AUZM01000348 513 1
AUZM01000349 512 1
AUZM01000350 508 1
AUZM01000351 499 2
AUZM01000352 493 1
AUZM01000353 487 1
AUZM01000354 479 1
AUZM01000355 478 1
AUZM01000356 475 1
AUZM01000357 474 1
AUZM01000358 469 1
AUZM01000359 469 1
AUZM01000360 467 1
AUZM01000361 466 1
AUZM01000362 463 1
AUZM01000363 454 1
AUZM01000364 452 1
AUZM01000365 439 1
AUZM01000366 432 1
AUZM01000367 431 1
AUZM01000368 429 0
AUZM01000369 428 1
AUZM01000370 424 2
AUZM01000371 423 1
AUZM01000372 414 1
AUZM01000373 412 0
AUZM01000374 405 1
AUZM01000375 405 1
AUZM01000376 405 1
AUZM01000377 404 0
AUZM01000378 404 1
AUZM01000379 400 1
AUZM01000380 399 1
AUZM01000381 395 1
AUZM01000382 395 1
AUZM01000383 394 1
AUZM01000384 391 1
AUZM01000385 387 1
AUZM01000386 383 1
AUZM01000387 382 2
AUZM01000388 381 1
AUZM01000389 379 1
AUZM01000390 364 1
AUZM01000391 362 1
AUZM01000392 361 2
AUZM01000393 361 1
AUZM01000394 360 1
AUZM01000395 358 2
AUZM01000396 353 1
AUZM01000397 353 2
AUZM01000398 353 1
AUZM01000399 352 1
AUZM01000400 350 1
AUZM01000401 347 0
AUZM01000402 346 0
AUZM01000403 346 1
AUZM01000404 344 1
AUZM01000405 335 2
AUZM01000406 334 1
AUZM01000407 333 1
AUZM01000408 333 1
AUZM01000409 330 1
AUZM01000410 329 1
AUZM01000411 329 1
AUZM01000412 329 1
AUZM01000413 327 1
AUZM01000414 327 1
AUZM01000415 324 1
AUZM01000416 322 1
AUZM01000417 322 1
AUZM01000418 322 1
AUZM01000419 322 1
AUZM01000420 316 1
AUZM01000421 315 1
AUZM01000422 314 1
AUZM01000423 312 1
AUZM01000424 311 1
AUZM01000425 311 1
AUZM01000426 309 1
AUZM01000427 307 1
AUZM01000428 306 1
AUZM01000429 306 1
AUZM01000430 305 2
AUZM01000431 304 1
AUZM01000432 301 0
AUZM01000433 295 1
AUZM01000434 295 1
AUZM01000435 295 1
AUZM01000436 290 1
AUZM01000437 288 1
AUZM01000438 282 1
AUZM01000439 266 1
Total 6,867,625 6,558
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000478195.2

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000478195.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000478195.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000478195.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000478195.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000478195.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000478195.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000478195.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000478195.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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