cyanobase » Rubidibacter lacunae KORDI 51-2

Rubidibacter lacunae KORDI 51-2

Summary

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Data source name GCA_000473895.1
Full name Rubidibacter lacunae KORDI 51-2 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Rubidibacter.

Genome Information

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Chromosomes
Name Size (bp) Genes
ASSJ01000049 238,979 188
ASSJ01000076 219,870 203
ASSJ01000070 211,174 181
ASSJ01000004 207,501 180
ASSJ01000079 191,469 177
ASSJ01000081 187,114 154
ASSJ01000035 178,476 142
ASSJ01000017 157,728 126
ASSJ01000001 153,556 109
ASSJ01000041 152,296 121
ASSJ01000055 136,409 118
ASSJ01000047 123,481 111
ASSJ01000008 105,011 87
ASSJ01000030 101,422 103
ASSJ01000083 74,747 70
ASSJ01000031 68,501 56
ASSJ01000040 68,423 58
ASSJ01000006 66,521 58
ASSJ01000066 65,300 54
ASSJ01000074 64,686 60
ASSJ01000036 63,483 51
ASSJ01000085 60,477 51
ASSJ01000021 57,769 54
ASSJ01000053 54,603 53
ASSJ01000034 54,099 13
ASSJ01000051 51,829 49
ASSJ01000060 49,294 42
ASSJ01000082 47,222 41
ASSJ01000003 46,615 48
ASSJ01000052 45,362 34
ASSJ01000005 43,629 30
ASSJ01000097 42,618 35
ASSJ01000015 40,120 40
ASSJ01000064 38,314 33
ASSJ01000084 37,528 30
ASSJ01000050 36,830 35
ASSJ01000007 35,921 37
ASSJ01000046 34,017 29
ASSJ01000092 32,302 17
ASSJ01000016 29,825 24
ASSJ01000024 27,125 23
ASSJ01000027 25,420 26
ASSJ01000058 24,846 23
ASSJ01000048 22,645 20
ASSJ01000028 21,063 20
ASSJ01000029 20,498 15
ASSJ01000014 20,138 19
ASSJ01000026 18,850 12
ASSJ01000012 17,284 12
ASSJ01000042 16,796 16
ASSJ01000068 15,658 12
ASSJ01000010 15,543 17
ASSJ01000043 15,472 7
ASSJ01000054 14,400 11
ASSJ01000090 13,193 8
ASSJ01000069 12,727 3
ASSJ01000022 12,660 12
ASSJ01000062 9,384 9
ASSJ01000059 9,154 10
ASSJ01000089 8,827 7
ASSJ01000044 8,754 8
ASSJ01000045 8,471 2
ASSJ01000077 8,294 6
ASSJ01000023 8,283 8
ASSJ01000087 7,349 2
ASSJ01000098 6,836 5
ASSJ01000018 6,608 5
ASSJ01000072 6,395 7
ASSJ01000025 6,005 4
ASSJ01000075 5,849 9
ASSJ01000063 5,471 6
ASSJ01000065 5,055 5
ASSJ01000011 4,627 2
ASSJ01000038 4,560 2
ASSJ01000020 4,546 5
ASSJ01000086 4,371 5
ASSJ01000057 3,762 6
ASSJ01000073 3,659 4
ASSJ01000033 3,191 1
ASSJ01000067 3,092 2
ASSJ01000039 3,064 4
ASSJ01000002 2,740 2
ASSJ01000032 2,345 3
ASSJ01000037 1,301 3
ASSJ01000013 1,146 1
ASSJ01000071 1,127 2
ASSJ01000078 1,087 1
ASSJ01000094 1,019 1
ASSJ01000009 1,010 0
ASSJ01000095 914 1
ASSJ01000091 873 1
ASSJ01000061 863 1
ASSJ01000080 780 1
ASSJ01000099 758 1
ASSJ01000093 739 1
ASSJ01000088 697 1
ASSJ01000056 658 1
ASSJ01000019 619 1
ASSJ01000096 536 1
Total 4,153,658 3,505
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000473895.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000473895.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000473895.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000473895.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000473895.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000473895.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000473895.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000473895.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000473895.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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