cyanobase » Planktothrix agardhii NIVA-CYA 34

Planktothrix agardhii NIVA-CYA 34

Summary

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Data source name GCA_000464725.1
Full name Planktothrix agardhii NIVA-CYA 34 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Planktothrix.

Genome Information

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Chromosomes
Name Size (bp) Genes
AVFT01000001 168,167 0
AVFT01000002 152,347 0
AVFT01000003 145,235 0
AVFT01000004 140,417 0
AVFT01000005 134,711 0
AVFT01000006 132,886 0
AVFT01000007 132,834 0
AVFT01000008 122,138 0
AVFT01000009 110,723 0
AVFT01000010 103,898 0
AVFT01000011 97,997 0
AVFT01000012 94,661 0
AVFT01000013 83,795 0
AVFT01000014 81,342 0
AVFT01000015 77,390 0
AVFT01000016 74,281 0
AVFT01000017 73,518 0
AVFT01000018 72,958 0
AVFT01000019 69,895 0
AVFT01000020 69,232 0
AVFT01000021 63,120 0
AVFT01000022 62,709 0
AVFT01000023 61,398 0
AVFT01000024 60,703 0
AVFT01000025 59,767 0
AVFT01000026 58,625 0
AVFT01000027 57,888 0
AVFT01000028 57,692 0
AVFT01000030 54,590 0
AVFT01000031 51,021 0
AVFT01000032 50,924 0
AVFT01000033 49,674 0
AVFT01000034 48,607 0
AVFT01000035 48,602 0
AVFT01000036 48,007 0
AVFT01000037 47,340 0
AVFT01000038 46,836 0
AVFT01000039 44,641 0
AVFT01000040 44,590 0
AVFT01000041 44,357 0
AVFT01000042 43,384 0
AVFT01000043 43,074 0
AVFT01000029 42,980 0
AVFT01000044 42,565 0
AVFT01000045 40,906 0
AVFT01000046 40,685 0
AVFT01000047 40,226 0
AVFT01000048 39,445 0
AVFT01000049 37,544 0
AVFT01000050 36,961 0
AVFT01000051 36,646 0
AVFT01000052 36,631 0
AVFT01000053 36,059 0
AVFT01000054 34,263 0
AVFT01000055 34,067 0
AVFT01000056 34,007 0
AVFT01000057 33,607 0
AVFT01000058 33,484 0
AVFT01000059 32,613 0
KE734697 31,891 0
AVFT01000060 31,665 0
AVFT01000064 31,469 0
AVFT01000065 31,065 0
AVFT01000066 30,916 0
KE734698 30,320 0
AVFT01000069 29,835 0
AVFT01000070 28,765 0
AVFT01000071 28,145 0
AVFT01000072 27,625 0
AVFT01000225 26,122 0
AVFT01000073 25,028 0
AVFT01000074 24,753 0
AVFT01000075 24,685 0
AVFT01000076 24,453 0
KE734699 23,626 0
AVFT01000080 23,108 0
AVFT01000081 22,891 0
KE734700 22,766 0
AVFT01000084 22,150 0
AVFT01000085 22,064 0
AVFT01000086 21,149 0
AVFT01000087 21,096 0
AVFT01000088 20,673 0
AVFT01000089 20,597 0
AVFT01000090 20,182 0
AVFT01000091 20,079 0
AVFT01000092 20,014 0
AVFT01000093 19,890 0
AVFT01000094 19,588 0
AVFT01000095 19,390 0
AVFT01000096 19,378 0
AVFT01000097 19,329 0
AVFT01000098 19,029 0
AVFT01000099 18,848 0
AVFT01000100 18,780 0
AVFT01000101 18,464 0
AVFT01000102 17,667 0
AVFT01000103 17,589 0
AVFT01000104 17,053 0
AVFT01000105 16,636 0
AVFT01000106 16,335 0
AVFT01000107 16,302 0
AVFT01000108 15,917 0
KE734701 15,815 0
AVFT01000226 15,537 0
AVFT01000111 15,339 0
AVFT01000112 15,246 0
AVFT01000113 14,425 0
AVFT01000114 14,397 0
AVFT01000115 14,144 0
AVFT01000116 13,947 0
AVFT01000117 13,400 0
AVFT01000118 13,074 0
AVFT01000119 12,981 0
AVFT01000120 12,689 0
KE734702 12,685 0
AVFT01000123 12,524 0
AVFT01000124 12,098 0
AVFT01000125 12,075 0
AVFT01000127 10,823 0
AVFT01000128 10,474 0
AVFT01000129 9,644 0
AVFT01000130 9,594 0
AVFT01000131 9,245 0
AVFT01000132 8,955 0
AVFT01000133 8,582 0
AVFT01000126 8,436 0
KE734703 8,365 0
AVFT01000134 8,204 0
AVFT01000135 7,880 0
AVFT01000136 7,755 0
AVFT01000141 7,636 0
AVFT01000142 7,596 0
AVFT01000143 7,448 0
AVFT01000144 7,279 0
AVFT01000145 7,257 0
AVFT01000146 7,142 0
AVFT01000147 7,067 0
AVFT01000148 6,767 0
AVFT01000149 6,693 0
AVFT01000150 6,616 0
AVFT01000151 6,516 0
AVFT01000152 6,409 0
AVFT01000153 6,254 0
AVFT01000154 5,695 0
AVFT01000155 5,415 0
AVFT01000156 5,396 0
AVFT01000157 5,354 0
AVFT01000158 5,037 0
AVFT01000159 4,984 0
AVFT01000160 4,973 0
AVFT01000161 4,746 0
AVFT01000162 4,626 0
AVFT01000163 4,512 0
AVFT01000164 4,480 0
AVFT01000165 4,451 0
AVFT01000166 4,387 0
AVFT01000167 4,357 0
AVFT01000168 4,277 0
AVFT01000169 4,248 0
AVFT01000170 4,150 0
AVFT01000171 4,137 0
AVFT01000172 4,042 0
AVFT01000173 3,962 0
AVFT01000174 3,961 0
AVFT01000175 3,360 0
AVFT01000176 3,323 0
AVFT01000177 3,305 0
AVFT01000178 3,231 0
AVFT01000179 3,231 0
AVFT01000180 3,217 0
AVFT01000181 3,196 0
AVFT01000182 3,062 0
AVFT01000183 3,042 0
AVFT01000184 3,031 0
AVFT01000185 3,026 0
AVFT01000186 2,920 0
AVFT01000187 2,892 0
AVFT01000188 2,694 0
AVFT01000189 2,602 0
AVFT01000190 2,396 0
AVFT01000191 2,325 0
AVFT01000192 2,289 0
AVFT01000193 2,272 0
AVFT01000196 1,883 0
AVFT01000197 1,683 0
AVFT01000198 1,573 0
AVFT01000199 1,526 0
AVFT01000200 1,376 0
AVFT01000201 1,344 0
AVFT01000202 1,340 0
AVFT01000203 1,219 0
AVFT01000204 1,193 0
AVFT01000205 1,096 0
AVFT01000206 1,033 0
AVFT01000207 1,028 0
AVFT01000208 1,022 0
AVFT01000209 1,021 0
AVFT01000210 1,006 0
AVFT01000211 996 0
AVFT01000212 930 0
AVFT01000213 817 0
AVFT01000214 775 0
AVFT01000215 728 0
AVFT01000216 727 0
AVFT01000217 684 0
AVFT01000218 628 0
AVFT01000219 564 0
AVFT01000220 555 0
AVFT01000221 547 0
AVFT01000222 529 0
AVFT01000223 517 0
AVFT01000224 500 0
Total 5,516,447 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000464725.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000464725.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000464725.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000464725.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000464725.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000464725.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000464725.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000464725.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000464725.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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