cyanobase » Dolichospermum circinale AWQC131C

Dolichospermum circinale AWQC131C

Summary

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Data source name GCA_000426905.1
Full name Dolichospermum circinale AWQC131C External
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Dolichospermum; Dolichospermum circinale.

Genome Information

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Chromosomes
Name Size (bp) Genes
KE384588 254,267 0
KE384601 205,154 0
KE384612 175,901 0
KE384623 167,757 0
KE384633 154,414 0
KE384642 153,500 0
KE384651 145,270 0
KE384657 127,463 0
KE384659 120,763 0
KE384589 114,248 0
KE384592 107,481 0
KE384593 94,385 0
KE384594 93,416 0
KE384595 89,559 0
KE384596 82,501 0
KE384597 80,825 0
KE384598 80,443 0
KE384599 79,947 0
KE384600 79,687 0
KE384602 77,472 0
KE384603 77,452 0
KE384604 74,993 0
KE384605 69,449 0
KE384606 69,070 0
KE384607 66,620 0
KE384608 65,975 0
KE384609 64,207 0
KE384610 63,110 0
KE384611 62,624 0
KE384613 61,207 0
KE384614 60,824 0
KE384615 59,706 0
KE384616 53,858 0
KE384617 52,884 0
KE384618 50,046 0
KE384619 48,992 0
KE384620 48,919 0
KE384621 48,758 0
KE384622 45,106 0
KE384624 40,761 0
APIY01000317 40,758 0
KE384625 40,070 0
KE384626 35,757 0
KE384627 34,807 0
KE384628 34,517 0
KE384629 31,471 0
APIY01000471 30,991 0
KE384630 30,587 0
KE384631 29,461 0
KE384632 29,091 0
KE384634 28,692 0
KE384635 26,802 0
KE384636 22,015 0
KE384637 20,827 0
KE384638 20,683 0
KE384639 20,283 0
APIY01000369 17,491 0
KE384640 17,163 0
KE384641 15,463 0
APIY01000380 13,664 0
KE384643 13,092 0
KE384644 12,683 0
KE384645 11,874 0
KE384646 11,187 0
KE384647 11,148 0
KE384648 11,024 0
APIY01000400 10,027 0
KE384649 9,717 0
APIY01000403 9,504 0
KE384650 9,329 0
KE384652 9,034 0
KE384653 7,922 0
APIY01000410 7,075 0
APIY01000411 6,879 0
KE384654 6,785 0
APIY01000416 6,405 0
APIY01000417 5,749 0
KE384655 5,725 0
KE384656 5,310 0
APIY01000423 4,607 0
APIY01000424 4,432 0
APIY01000425 3,791 0
APIY01000472 3,143 0
APIY01000426 3,026 0
APIY01000427 2,926 0
APIY01000428 2,871 0
APIY01000429 2,773 0
APIY01000430 2,757 0
APIY01000431 2,383 0
KE384658 2,077 0
APIY01000435 1,979 0
APIY01000436 1,796 0
APIY01000437 1,715 0
APIY01000438 1,530 0
APIY01000439 1,412 0
APIY01000440 1,381 0
APIY01000441 1,252 0
APIY01000442 1,249 0
KE384660 1,142 0
KE384661 1,107 0
KE384662 1,099 0
KE384590 1,045 0
APIY01000451 1,014 0
APIY01000452 993 0
APIY01000453 966 0
APIY01000454 941 0
APIY01000455 858 0
APIY01000456 853 0
KE384591 839 0
APIY01000459 747 0
APIY01000460 708 0
APIY01000461 682 0
APIY01000462 670 0
APIY01000463 639 0
APIY01000464 623 0
APIY01000465 619 0
APIY01000466 617 0
APIY01000467 615 0
APIY01000468 605 0
APIY01000469 585 0
APIY01000470 505 0
Total 4,445,648 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000426905.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000426905.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000426905.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000426905.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000426905.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000426905.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000426905.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000426905.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000426905.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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