cyanobase » Richelia intracellularis HH01

Richelia intracellularis HH01

Summary

? | +/- | Top
Data source name GCA_000350105.1
Full name Richelia intracellularis HH01 External
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Richelia.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
CAIY01000044 383,331 274
CAIY01000027 381,669 280
CAIY01000085 127,276 87
CAIY01000005 126,255 86
CAIY01000029 121,662 94
CAIY01000080 120,239 83
CAIY01000038 109,784 85
CAIY01000088 95,791 71
CAIY01000052 85,585 60
CAIY01000069 82,975 53
CAIY01000054 76,090 59
CAIY01000012 73,475 47
CAIY01000033 72,213 59
CAIY01000028 71,267 42
CAIY01000031 64,364 52
CAIY01000011 61,915 60
CAIY01000070 56,970 41
CAIY01000016 56,729 39
CAIY01000082 55,995 35
CAIY01000006 53,796 37
CAIY01000081 51,301 36
CAIY01000047 50,890 35
CAIY01000067 47,152 32
CAIY01000087 47,102 26
CAIY01000035 42,745 31
CAIY01000001 40,866 26
CAIY01000056 40,113 27
CAIY01000075 38,201 22
CAIY01000049 35,719 28
CAIY01000076 35,623 25
CAIY01000073 34,747 33
CAIY01000036 33,139 25
CAIY01000015 31,549 27
CAIY01000025 30,922 23
CAIY01000018 27,715 19
CAIY01000071 27,180 20
CAIY01000060 27,037 18
CAIY01000039 26,335 20
CAIY01000084 25,603 18
CAIY01000068 19,008 17
CAIY01000055 17,668 12
CAIY01000053 17,656 10
CAIY01000077 17,491 19
CAIY01000042 15,960 9
CAIY01000009 15,216 12
CAIY01000065 14,591 7
CAIY01000072 12,841 6
CAIY01000021 12,169 6
CAIY01000037 11,095 9
CAIY01000002 9,588 6
CAIY01000046 9,364 8
CAIY01000089 7,365 4
CAIY01000004 6,792 4
CAIY01000014 6,537 5
CAIY01000010 6,502 5
CAIY01000020 5,759 4
CAIY01000063 5,443 5
CAIY01000079 5,364 1
CAIY01000013 4,322 3
CAIY01000045 4,261 3
CAIY01000019 3,982 1
CAIY01000043 3,700 1
CAIY01000003 3,648 4
CAIY01000051 3,458 2
CAIY01000057 3,004 1
CAIY01000061 2,133 2
CAIY01000022 2,118 3
CAIY01000040 2,004 1
CAIY01000048 1,995 1
CAIY01000086 1,837 2
CAIY01000066 1,612 1
CAIY01000074 1,502 3
CAIY01000007 1,495 1
CAIY01000059 1,408 1
CAIY01000030 1,269 0
CAIY01000024 1,202 1
CAIY01000062 1,182 1
CAIY01000041 1,177 1
CAIY01000064 1,018 0
CAIY01000032 948 2
CAIY01000026 887 0
CAIY01000023 873 0
CAIY01000058 873 0
CAIY01000034 784 0
CAIY01000090 689 0
CAIY01000050 587 0
CAIY01000078 565 0
CAIY01000083 520 0
CAIY01000008 495 1
CAIY01000017 482 0
Total 3,243,759 2,320
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000350105.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000350105.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000350105.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000350105.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000350105.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000350105.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000350105.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000350105.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000350105.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer