cyanobase » Scytonema hofmanni PCC 7110

Scytonema hofmanni PCC 7110

Summary

? | +/- | Top
Data source name GCA_000346485.1
Full name Scytonema hofmanni PCC 7110 External
Taxonomy Lineage Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
ANNX01000026 380,245 0
ANNX01000033 352,304 0
ANNX01000017 313,089 0
ANNX01000024 299,194 0
ANNX01000035 266,386 0
ANNX01000099 265,308 0
ANNX01000030 252,302 0
ANNX01000006 249,876 0
ANNX01000098 247,981 0
ANNX01000111 247,147 0
ANNX01000113 231,644 0
ANNX01000108 224,141 0
ANNX01000120 223,061 0
ANNX01000054 222,016 0
ANNX01000019 184,641 0
ANNX01000100 177,001 0
ANNX01000115 176,663 0
ANNX01000106 160,549 0
ANNX01000064 159,142 0
ANNX01000094 148,997 0
ANNX01000121 146,814 0
ANNX01000136 142,829 0
ANNX01000092 142,383 0
ANNX01000044 137,793 0
ANNX01000028 129,404 0
ANNX01000117 122,484 0
ANNX01000059 118,892 0
ANNX01000167 114,451 0
ANNX01000145 112,600 0
ANNX01000014 110,366 0
ANNX01000166 109,811 0
ANNX01000129 105,007 0
ANNX01000168 103,910 0
ANNX01000096 102,757 0
ANNX01000037 95,663 0
ANNX01000012 94,356 0
ANNX01000156 87,827 0
ANNX01000170 85,507 0
ANNX01000132 82,850 0
ANNX01000071 81,889 0
ANNX01000091 80,998 0
ANNX01000029 78,995 0
ANNX01000016 78,609 0
ANNX01000085 73,874 0
ANNX01000046 72,441 0
ANNX01000101 72,217 0
ANNX01000118 71,776 0
ANNX01000155 70,919 0
ANNX01000053 70,436 0
ANNX01000185 69,869 0
ANNX01000186 69,727 0
ANNX01000066 68,844 0
ANNX01000142 68,260 0
ANNX01000031 68,237 0
ANNX01000187 68,186 0
ANNX01000018 67,801 0
ANNX01000043 66,727 0
ANNX01000188 66,286 0
ANNX01000027 65,239 0
ANNX01000081 64,817 0
ANNX01000171 63,836 0
ANNX01000154 63,184 0
ANNX01000189 62,961 0
ANNX01000163 61,154 0
ANNX01000190 60,860 0
ANNX01000184 60,660 0
ANNX01000048 60,555 0
ANNX01000075 60,124 0
ANNX01000191 59,938 0
ANNX01000134 59,681 0
ANNX01000058 59,318 0
ANNX01000192 58,089 0
ANNX01000107 58,076 0
ANNX01000131 58,052 0
ANNX01000151 57,558 0
ANNX01000150 54,059 0
ANNX01000116 53,707 0
ANNX01000090 53,483 0
ANNX01000057 52,257 0
ANNX01000193 52,083 0
ANNX01000010 51,315 0
ANNX01000180 50,577 0
ANNX01000083 48,414 0
ANNX01000174 46,207 0
ANNX01000060 45,512 0
ANNX01000062 45,384 0
ANNX01000011 45,191 0
ANNX01000087 44,562 0
ANNX01000067 44,125 0
ANNX01000008 43,830 0
ANNX01000045 43,700 0
ANNX01000164 41,021 0
ANNX01000072 40,587 0
ANNX01000178 39,627 0
ANNX01000200 39,216 0
ANNX01000063 38,474 0
ANNX01000095 36,699 0
ANNX01000147 36,523 0
ANNX01000201 36,468 0
ANNX01000003 35,799 0
ANNX01000069 34,208 0
ANNX01000175 33,978 0
ANNX01000079 32,914 0
ANNX01000001 32,382 0
ANNX01000119 32,311 0
ANNX01000065 32,195 0
ANNX01000176 31,909 0
ANNX01000076 31,772 0
ANNX01000204 30,820 0
ANNX01000202 29,395 0
ANNX01000084 29,228 0
ANNX01000199 29,047 0
ANNX01000061 28,697 0
ANNX01000143 28,638 0
ANNX01000086 28,610 0
ANNX01000015 28,405 0
ANNX01000080 28,253 0
ANNX01000013 27,836 0
ANNX01000097 27,450 0
ANNX01000181 27,313 0
ANNX01000205 25,709 0
ANNX01000049 24,408 0
ANNX01000020 24,206 0
ANNX01000206 24,136 0
ANNX01000194 22,972 0
ANNX01000172 21,781 0
ANNX01000133 21,145 0
ANNX01000088 20,789 0
ANNX01000138 20,602 0
ANNX01000137 20,523 0
ANNX01000210 20,429 0
ANNX01000051 20,173 0
ANNX01000122 19,978 0
ANNX01000068 19,627 0
ANNX01000110 18,454 0
ANNX01000135 17,932 0
ANNX01000160 17,559 0
ANNX01000093 17,331 0
ANNX01000025 16,792 0
ANNX01000032 16,304 0
ANNX01000149 15,686 0
ANNX01000103 15,638 0
ANNX01000165 15,328 0
ANNX01000211 15,300 0
ANNX01000070 15,125 0
ANNX01000158 14,980 0
ANNX01000007 14,950 0
ANNX01000212 14,751 0
ANNX01000040 13,613 0
ANNX01000159 13,210 0
ANNX01000127 12,880 0
ANNX01000157 12,377 0
ANNX01000183 12,207 0
ANNX01000213 11,924 0
ANNX01000207 11,824 0
ANNX01000140 11,477 0
ANNX01000197 11,323 0
ANNX01000148 10,543 0
ANNX01000198 10,128 0
ANNX01000216 9,137 0
ANNX01000050 8,618 0
ANNX01000208 7,569 0
ANNX01000195 7,300 0
ANNX01000179 7,224 0
ANNX01000074 6,982 0
ANNX01000217 6,650 0
ANNX01000078 6,265 0
ANNX01000218 6,006 0
ANNX01000128 5,932 0
ANNX01000182 5,481 0
ANNX01000141 5,441 0
ANNX01000038 5,056 0
ANNX01000056 4,937 0
ANNX01000109 4,882 0
ANNX01000022 4,834 0
ANNX01000114 4,825 0
ANNX01000214 4,793 0
ANNX01000041 4,773 0
ANNX01000221 4,700 0
ANNX01000215 4,523 0
ANNX01000005 4,484 0
ANNX01000089 4,311 0
ANNX01000102 4,193 0
ANNX01000162 4,073 0
ANNX01000222 3,848 0
ANNX01000077 3,752 0
ANNX01000021 3,617 0
ANNX01000104 3,542 0
ANNX01000173 3,483 0
ANNX01000004 3,474 0
ANNX01000105 3,234 0
ANNX01000009 3,207 0
ANNX01000223 3,051 0
ANNX01000042 3,019 0
ANNX01000002 2,903 0
ANNX01000224 2,899 0
ANNX01000112 2,841 0
ANNX01000152 2,828 0
ANNX01000036 2,789 0
ANNX01000146 2,726 0
ANNX01000225 2,701 0
ANNX01000161 2,492 0
ANNX01000226 2,448 0
ANNX01000220 2,416 0
ANNX01000130 2,361 0
ANNX01000169 2,264 0
ANNX01000227 2,193 0
ANNX01000209 2,160 0
ANNX01000034 2,113 0
ANNX01000228 2,096 0
ANNX01000229 2,081 0
ANNX01000230 2,080 0
ANNX01000055 2,056 0
ANNX01000231 1,998 0
ANNX01000052 1,953 0
ANNX01000232 1,931 0
ANNX01000233 1,896 0
ANNX01000234 1,726 0
ANNX01000235 1,696 0
ANNX01000039 1,606 0
ANNX01000082 1,556 0
ANNX01000236 1,483 0
ANNX01000237 1,475 0
ANNX01000238 1,384 0
ANNX01000239 1,384 0
ANNX01000240 1,379 0
ANNX01000203 1,350 0
ANNX01000023 1,350 0
ANNX01000219 1,343 0
ANNX01000241 1,278 0
ANNX01000242 1,264 0
ANNX01000243 1,248 0
ANNX01000244 1,232 0
ANNX01000245 1,217 0
ANNX01000246 1,092 0
ANNX01000247 1,068 0
ANNX01000126 1,038 0
ANNX01000123 1,020 0
ANNX01000248 984 0
ANNX01000249 975 0
ANNX01000153 956 0
ANNX01000250 910 0
ANNX01000251 888 0
ANNX01000252 883 0
ANNX01000253 871 0
ANNX01000254 842 0
ANNX01000255 839 0
ANNX01000144 826 0
ANNX01000256 810 0
ANNX01000257 801 0
ANNX01000124 801 0
ANNX01000073 788 0
ANNX01000258 771 0
ANNX01000259 762 0
ANNX01000260 758 0
ANNX01000196 757 0
ANNX01000261 757 0
ANNX01000262 749 0
ANNX01000177 737 0
ANNX01000125 687 0
ANNX01000263 683 0
ANNX01000264 674 0
ANNX01000265 604 0
ANNX01000266 603 0
ANNX01000267 590 0
ANNX01000268 555 0
ANNX01000139 529 0
ANNX01000269 529 0
ANNX01000270 496 0
ANNX01000271 461 0
ANNX01000272 448 0
ANNX01000273 439 0
ANNX01000274 436 0
ANNX01000275 429 0
ANNX01000276 428 0
ANNX01000047 422 0
ANNX01000277 418 0
ANNX01000278 397 0
ANNX01000279 393 0
ANNX01000280 383 0
ANNX01000281 380 0
ANNX01000282 379 0
ANNX01000283 379 0
ANNX01000284 360 0
ANNX01000285 323 0
ANNX01000286 321 0
ANNX01000287 320 0
ANNX01000289 310 0
ANNX01000288 310 0
ANNX01000290 305 0
ANNX01000291 303 0
ANNX01000292 302 0
ANNX01000293 291 0
ANNX01000294 291 0
ANNX01000295 255 0
ANNX01000296 237 0
ANNX01000297 237 0
ANNX01000298 235 0
ANNX01000299 232 0
ANNX01000300 232 0
ANNX01000301 231 0
ANNX01000302 223 0
ANNX01000303 215 0
ANNX01000304 214 0
ANNX01000305 210 0
ANNX01000306 206 0
ANNX01000307 203 0
ANNX01000308 202 0
Total 12,011,284 0
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_000346485.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000346485.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000346485.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000346485.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000346485.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000346485.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000346485.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000346485.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000346485.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer