cyanobase » Prochlorothrix hollandica PCC 9006

Prochlorothrix hollandica PCC 9006

Summary

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Data source name GCA_000341585.2
Full name Prochlorothrix hollandica PCC 9006 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorotrichaceae; Prochlorothrix.

Genome Information

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Chromosomes
Name Size (bp) Genes
AJTX02000004 1,615,536 1,084
AJTX02000002 1,244,169 850
AJTX02000006 860,293 621
AJTX02000010 450,565 309
AJTX02000003 394,976 257
AJTX02000007 383,678 268
AJTX02000008 243,187 164
AJTX02000005 173,333 120
AJTX02000009 157,345 104
AJTX02000001 2,387 2
Total 5,525,469 3,779
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000341585.2

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000341585.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000341585.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000341585.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000341585.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000341585.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000341585.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000341585.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000341585.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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