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cyanobase » Pseudanabaena biceps PCC 7429

Pseudanabaena biceps PCC 7429

Summary

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Data source name GCA_000332215.1
Full name Pseudanabaena biceps PCC 7429
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALWB01000001 70,502 63
ALWB01000002 59,472 55
ALWB01000004 54,532 47
ALWB01000005 53,140 41
ALWB01000007 53,035 42
ALWB01000008 52,516 51
ALWB01000006 51,229 41
ALWB01000003 50,704 51
ALWB01000011 50,485 49
ALWB01000009 49,310 50
ALWB01000010 45,376 42
ALWB01000014 43,438 34
ALWB01000013 42,340 41
ALWB01000033 40,795 25
ALWB01000017 40,206 32
ALWB01000016 40,117 29
ALWB01000020 39,714 35
ALWB01000015 39,619 30
ALWB01000019 38,221 40
ALWB01000022 36,941 28
ALWB01000021 35,507 30
ALWB01000024 35,467 29
ALWB01000012 35,336 40
ALWB01000018 34,984 23
ALWB01000023 34,840 33
ALWB01000025 34,474 27
ALWB01000029 33,697 31
ALWB01000034 33,470 28
ALWB01000030 32,806 27
ALWB01000026 32,774 35
ALWB01000032 32,735 23
ALWB01000028 32,424 31
ALWB01000031 31,794 33
ALWB01000027 31,496 35
ALWB01000037 30,966 31
ALWB01000070 30,877 21
ALWB01000039 30,431 30
ALWB01000035 30,275 32
ALWB01000038 29,653 24
ALWB01000042 28,936 22
ALWB01000062 28,892 25
ALWB01000041 28,809 24
ALWB01000054 28,363 26
ALWB01000056 28,269 27
ALWB01000045 28,237 24
ALWB01000049 28,127 21
ALWB01000048 27,647 19
ALWB01000052 27,602 25
ALWB01000036 27,338 17
ALWB01000059 26,953 26
ALWB01000061 26,438 15
ALWB01000057 26,254 19
ALWB01000119 26,106 21
ALWB01000060 26,067 22
ALWB01000050 26,001 18
ALWB01000044 25,983 23
ALWB01000053 25,960 16
ALWB01000055 25,940 21
ALWB01000046 25,816 12
ALWB01000068 25,289 27
ALWB01000063 24,709 13
ALWB01000058 24,566 19
ALWB01000064 24,506 29
ALWB01000066 24,231 31
ALWB01000067 23,619 19
ALWB01000043 23,552 21
ALWB01000072 23,285 22
ALWB01000074 23,282 32
ALWB01000073 23,179 16
ALWB01000090 22,846 21
ALWB01000051 22,722 20
ALWB01000086 22,138 14
ALWB01000084 21,968 19
ALWB01000040 21,938 21
ALWB01000082 21,899 14
ALWB01000075 21,874 8
ALWB01000081 21,697 20
ALWB01000078 21,544 19
ALWB01000079 21,487 18
ALWB01000083 21,472 19
ALWB01000089 21,418 17
ALWB01000069 21,350 18
ALWB01000088 21,296 22
ALWB01000097 21,258 21
ALWB01000077 20,951 15
ALWB01000096 20,913 17
ALWB01000047 20,529 22
ALWB01000091 20,373 23
ALWB01000087 19,879 17
ALWB01000099 19,771 13
ALWB01000092 19,748 19
ALWB01000080 19,598 16
ALWB01000094 19,535 16
ALWB01000076 19,390 19
ALWB01000100 19,364 14
ALWB01000101 19,334 18
ALWB01000098 19,155 19
ALWB01000108 19,101 22
ALWB01000155 19,074 13
ALWB01000071 19,001 3
ALWB01000095 18,942 16
ALWB01000110 18,913 22
ALWB01000104 18,726 20
ALWB01000114 18,590 17
ALWB01000093 18,325 18
ALWB01000113 18,252 20
ALWB01000112 17,810 6
ALWB01000126 17,717 15
ALWB01000117 17,634 14
ALWB01000109 17,598 10
ALWB01000118 17,555 15
ALWB01000111 17,495 13
ALWB01000124 17,420 16
ALWB01000123 17,416 14
ALWB01000120 17,267 17
ALWB01000106 17,233 14
ALWB01000122 16,825 11
ALWB01000103 16,820 17
ALWB01000116 16,448 12
ALWB01000142 16,354 11
ALWB01000115 16,140 8
ALWB01000147 15,837 0
ALWB01000150 15,712 15
ALWB01000121 15,649 16
ALWB01000085 15,637 16
ALWB01000105 15,573 20
ALWB01000129 15,432 7
ALWB01000143 15,424 11
ALWB01000151 15,321 12
ALWB01000065 15,257 11
ALWB01000139 15,198 11
ALWB01000156 14,902 14
ALWB01000128 14,830 9
ALWB01000125 14,818 15
ALWB01000130 14,790 16
ALWB01000134 14,786 16
ALWB01000132 14,637 14
ALWB01000157 14,565 14
ALWB01000133 14,498 11
ALWB01000136 14,462 10
ALWB01000145 14,342 12
ALWB01000154 14,287 14
ALWB01000138 14,264 11
ALWB01000152 14,255 14
ALWB01000146 14,225 11
ALWB01000140 14,216 17
ALWB01000166 14,199 9
ALWB01000137 14,111 10
ALWB01000158 14,079 18
ALWB01000153 13,830 16
ALWB01000131 13,760 8
ALWB01000135 13,648 16
ALWB01000141 13,610 11
ALWB01000149 13,585 8
ALWB01000160 13,544 13
ALWB01000162 13,500 14
ALWB01000127 13,469 16
ALWB01000210 13,184 8
ALWB01000165 13,159 12
ALWB01000102 12,956 12
ALWB01000148 12,757 6
ALWB01000176 12,643 14
ALWB01000168 12,638 12
ALWB01000167 12,507 11
ALWB01000178 12,120 12
ALWB01000172 11,998 7
ALWB01000144 11,992 10
ALWB01000190 11,912 14
ALWB01000177 11,854 9
ALWB01000173 11,831 9
ALWB01000171 11,717 17
ALWB01000197 11,637 2
ALWB01000195 11,578 12
ALWB01000179 11,523 9
ALWB01000205 11,434 9
ALWB01000199 11,407 15
ALWB01000182 11,400 11
ALWB01000191 11,320 13
ALWB01000107 11,283 12
ALWB01000183 11,140 11
ALWB01000161 11,086 11
ALWB01000189 11,027 12
ALWB01000194 10,992 7
ALWB01000184 10,982 8
ALWB01000200 10,928 13
ALWB01000180 10,870 8
ALWB01000164 10,709 5
ALWB01000196 10,636 8
ALWB01000214 10,621 9
ALWB01000175 10,583 5
ALWB01000192 10,546 6
ALWB01000187 10,543 10
ALWB01000174 10,419 17
ALWB01000239 10,407 9
ALWB01000204 10,343 8
ALWB01000188 10,333 6
ALWB01000208 10,204 8
ALWB01000181 10,189 7
ALWB01000220 10,172 9
ALWB01000202 10,093 8
ALWB01000169 10,012 6
ALWB01000221 9,864 9
ALWB01000198 9,717 14
ALWB01000207 9,675 7
ALWB01000219 9,528 11
ALWB01000216 9,519 7
ALWB01000232 9,477 6
ALWB01000201 9,373 10
ALWB01000206 9,333 3
ALWB01000212 9,328 10
ALWB01000218 9,312 6
ALWB01000186 9,181 7
ALWB01000241 8,994 10
ALWB01000209 8,978 7
ALWB01000211 8,864 8
ALWB01000224 8,861 11
ALWB01000203 8,855 8
ALWB01000213 8,819 7
ALWB01000240 8,788 9
ALWB01000237 8,781 8
ALWB01000231 8,709 8
ALWB01000223 8,653 8
ALWB01000159 8,587 6
ALWB01000230 8,494 8
ALWB01000215 8,485 5
ALWB01000222 8,417 5
ALWB01000234 8,371 7
ALWB01000227 8,265 7
ALWB01000228 8,229 7
ALWB01000238 8,122 8
ALWB01000229 8,101 10
ALWB01000253 8,005 6
ALWB01000260 7,736 5
ALWB01000246 7,652 7
ALWB01000244 7,647 7
ALWB01000243 7,643 8
ALWB01000251 7,636 7
ALWB01000252 7,585 5
ALWB01000233 7,563 6
ALWB01000225 7,515 5
ALWB01000250 7,501 6
ALWB01000256 7,499 8
ALWB01000245 7,489 8
ALWB01000242 7,427 7
ALWB01000170 7,350 6
ALWB01000262 7,332 5
ALWB01000263 7,331 7
ALWB01000236 7,322 6
ALWB01000259 7,314 10
ALWB01000249 7,234 7
ALWB01000274 7,057 6
ALWB01000257 7,015 6
ALWB01000254 7,014 3
ALWB01000193 7,009 9
ALWB01000247 6,907 6
ALWB01000235 6,725 6
ALWB01000265 6,687 8
ALWB01000272 6,558 5
ALWB01000267 6,512 4
ALWB01000163 6,504 6
ALWB01000273 6,480 5
ALWB01000258 6,463 7
ALWB01000277 6,351 5
ALWB01000264 6,188 7
ALWB01000288 6,161 9
ALWB01000289 6,124 8
ALWB01000286 6,115 3
ALWB01000276 6,088 6
ALWB01000270 6,029 5
ALWB01000248 5,999 10
ALWB01000268 5,975 6
ALWB01000279 5,970 5
ALWB01000275 5,956 5
ALWB01000291 5,944 6
ALWB01000284 5,896 6
ALWB01000281 5,850 7
ALWB01000269 5,775 6
ALWB01000290 5,772 2
ALWB01000278 5,729 6
ALWB01000301 5,702 6
ALWB01000292 5,691 4
ALWB01000295 5,611 7
ALWB01000280 5,589 4
ALWB01000285 5,578 6
ALWB01000282 5,551 4
ALWB01000308 5,509 5
ALWB01000293 5,430 9
ALWB01000287 5,429 4
ALWB01000306 5,410 5
ALWB01000303 5,393 6
ALWB01000317 5,389 5
ALWB01000294 5,221 4
ALWB01000283 5,180 5
ALWB01000302 5,154 6
ALWB01000304 5,133 3
ALWB01000266 5,076 1
ALWB01000298 5,042 3
ALWB01000315 4,990 4
ALWB01000296 4,952 4
ALWB01000322 4,879 4
ALWB01000311 4,877 5
ALWB01000335 4,819 4
ALWB01000297 4,690 7
ALWB01000309 4,666 5
ALWB01000310 4,657 2
ALWB01000321 4,538 3
ALWB01000324 4,502 4
ALWB01000320 4,423 6
ALWB01000313 4,421 10
ALWB01000323 4,355 2
ALWB01000337 4,287 6
ALWB01000314 4,277 4
ALWB01000299 4,246 6
ALWB01000333 4,220 2
ALWB01000355 4,166 6
ALWB01000326 4,071 2
ALWB01000339 4,055 3
ALWB01000319 4,014 5
ALWB01000331 4,008 4
ALWB01000342 3,979 3
ALWB01000327 3,935 3
ALWB01000300 3,886 5
ALWB01000344 3,860 4
ALWB01000305 3,853 3
ALWB01000338 3,835 6
ALWB01000348 3,778 3
ALWB01000329 3,760 2
ALWB01000325 3,751 3
ALWB01000343 3,629 5
ALWB01000330 3,607 4
ALWB01000334 3,599 3
ALWB01000352 3,595 4
ALWB01000349 3,587 2
ALWB01000336 3,546 3
ALWB01000217 3,544 2
ALWB01000353 3,523 3
ALWB01000346 3,480 4
ALWB01000255 3,452 4
ALWB01000351 3,399 2
ALWB01000360 3,347 4
ALWB01000332 3,294 1
ALWB01000354 3,285 1
ALWB01000340 3,245 1
ALWB01000318 3,237 4
ALWB01000358 3,231 4
ALWB01000361 3,167 4
ALWB01000373 3,130 3
ALWB01000362 3,110 1
ALWB01000341 3,110 2
ALWB01000185 3,070 4
ALWB01000399 3,067 5
ALWB01000357 3,067 4
ALWB01000226 3,066 3
ALWB01000345 3,052 2
ALWB01000359 3,035 3
ALWB01000328 3,004 3
ALWB01000366 3,003 3
ALWB01000347 2,992 4
ALWB01000391 2,980 3
ALWB01000378 2,930 1
ALWB01000356 2,887 2
ALWB01000371 2,868 4
ALWB01000261 2,847 3
ALWB01000377 2,794 3
ALWB01000365 2,674 1
ALWB01000370 2,638 4
ALWB01000350 2,637 7
ALWB01000363 2,564 3
ALWB01000382 2,557 3
ALWB01000368 2,520 2
ALWB01000312 2,509 4
ALWB01000367 2,481 2
ALWB01000369 2,463 2
ALWB01000379 2,375 1
ALWB01000364 2,375 2
ALWB01000384 2,370 1
ALWB01000380 2,247 1
ALWB01000375 2,234 3
ALWB01000387 2,199 2
ALWB01000385 2,179 4
ALWB01000411 2,155 2
ALWB01000316 2,130 3
ALWB01000389 2,129 3
ALWB01000383 2,110 2
ALWB01000381 2,078 3
ALWB01000397 2,076 1
ALWB01000395 2,052 1
ALWB01000394 2,032 2
ALWB01000401 2,000 1
ALWB01000390 1,994 2
ALWB01000400 1,948 1
ALWB01000398 1,881 4
ALWB01000374 1,845 2
ALWB01000393 1,833 2
ALWB01000376 1,822 3
ALWB01000402 1,820 3
ALWB01000403 1,762 2
ALWB01000413 1,757 2
ALWB01000396 1,749 1
ALWB01000386 1,732 3
ALWB01000415 1,695 2
ALWB01000438 1,678 1
ALWB01000392 1,678 3
ALWB01000414 1,678 1
ALWB01000416 1,676 2
ALWB01000406 1,656 3
ALWB01000409 1,603 2
ALWB01000420 1,577 2
ALWB01000421 1,563 1
ALWB01000307 1,514 1
ALWB01000464 1,501 1
ALWB01000271 1,500 2
ALWB01000407 1,497 1
ALWB01000410 1,467 2
ALWB01000404 1,441 2
ALWB01000434 1,404 2
ALWB01000427 1,348 2
ALWB01000405 1,347 1
ALWB01000425 1,326 1
ALWB01000418 1,319 1
ALWB01000408 1,239 2
ALWB01000388 1,185 2
ALWB01000429 1,177 0
ALWB01000430 1,170 1
ALWB01000412 1,163 2
ALWB01000426 1,088 3
ALWB01000428 1,064 2
ALWB01000449 1,063 1
ALWB01000437 1,023 1
ALWB01000442 1,017 1
ALWB01000439 999 1
ALWB01000432 985 1
ALWB01000419 934 2
ALWB01000424 931 3
ALWB01000372 922 2
ALWB01000454 892 1
ALWB01000460 887 1
ALWB01000435 886 1
ALWB01000441 871 1
ALWB01000443 864 4
ALWB01000444 853 3
ALWB01000423 833 1
ALWB01000422 755 1
ALWB01000447 730 2
ALWB01000436 704 0
ALWB01000457 698 0
ALWB01000451 687 1
ALWB01000458 686 1
ALWB01000431 681 1
ALWB01000456 675 1
ALWB01000455 671 1
ALWB01000448 627 1
ALWB01000452 615 1
ALWB01000440 579 0
ALWB01000453 562 1
ALWB01000462 552 2
ALWB01000417 548 1
ALWB01000450 528 1
ALWB01000461 521 1
ALWB01000463 520 2
ALWB01000446 508 0
ALWB01000459 506 0
ALWB01000433 501 1
ALWB01000445 501 2
Total 5,476,421 4,803
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000332215.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000332215.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000332215.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000332215.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000332215.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000332215.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000332215.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000332215.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000332215.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000332215.1/genes/interpro.txt (File format)

MicrobeBase