cyanobase » Xenococcus sp. PCC 7305

Xenococcus sp. PCC 7305

Summary

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Data source name GCA_000332055.1
Full name Xenococcus sp. PCC 7305 External
Taxonomy Lineage Cyanobacteria; Pleurocapsales; Xenococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALVZ01000234 127,843 133
ALVZ01000233 122,064 80
ALVZ01000232 116,327 108
ALVZ01000231 113,740 93
ALVZ01000230 109,945 109
ALVZ01000227 106,305 103
ALVZ01000226 100,126 86
ALVZ01000225 93,818 111
ALVZ01000228 91,203 74
ALVZ01000224 90,227 86
ALVZ01000223 84,218 81
ALVZ01000222 82,758 73
ALVZ01000221 77,806 57
ALVZ01000220 68,835 68
ALVZ01000219 67,000 65
ALVZ01000218 64,392 58
ALVZ01000217 61,318 52
ALVZ01000216 60,466 62
ALVZ01000215 60,457 50
ALVZ01000214 59,903 49
ALVZ01000213 59,710 45
ALVZ01000212 59,413 62
ALVZ01000211 58,339 56
ALVZ01000210 57,047 49
ALVZ01000200 56,002 60
ALVZ01000199 54,053 42
ALVZ01000198 52,324 47
ALVZ01000197 50,189 27
ALVZ01000196 50,032 48
ALVZ01000195 48,842 45
ALVZ01000194 48,268 52
ALVZ01000193 48,164 40
ALVZ01000192 47,900 42
ALVZ01000191 47,363 43
ALVZ01000190 46,849 34
ALVZ01000189 45,835 37
ALVZ01000186 44,592 52
ALVZ01000185 43,941 33
ALVZ01000184 43,918 47
ALVZ01000183 43,453 27
ALVZ01000182 42,346 35
ALVZ01000181 41,121 32
ALVZ01000180 40,977 41
ALVZ01000179 40,739 31
ALVZ01000178 38,512 36
ALVZ01000177 38,394 40
ALVZ01000176 37,519 33
ALVZ01000175 37,287 25
ALVZ01000174 37,266 36
ALVZ01000173 37,075 28
ALVZ01000172 36,751 35
ALVZ01000171 36,379 25
ALVZ01000168 35,556 36
ALVZ01000167 35,004 30
ALVZ01000166 34,740 34
ALVZ01000165 34,671 3
ALVZ01000164 34,363 31
ALVZ01000163 34,144 33
ALVZ01000162 34,004 39
ALVZ01000161 33,585 34
ALVZ01000160 33,411 23
ALVZ01000159 33,216 33
ALVZ01000158 32,665 34
ALVZ01000187 32,605 35
ALVZ01000157 32,506 34
ALVZ01000156 32,416 32
ALVZ01000155 32,255 26
ALVZ01000154 32,080 18
ALVZ01000153 31,450 28
ALVZ01000152 31,377 25
ALVZ01000151 31,342 24
ALVZ01000169 30,222 31
ALVZ01000150 30,003 31
ALVZ01000149 29,628 23
ALVZ01000148 29,241 26
ALVZ01000147 29,174 25
ALVZ01000146 29,139 20
ALVZ01000142 28,916 34
ALVZ01000141 27,916 23
ALVZ01000140 27,900 25
ALVZ01000139 27,828 26
ALVZ01000138 27,653 24
ALVZ01000137 26,961 20
ALVZ01000136 26,372 11
ALVZ01000135 26,155 24
ALVZ01000134 26,074 32
ALVZ01000133 25,316 27
ALVZ01000128 24,513 25
ALVZ01000127 24,364 20
ALVZ01000126 24,210 25
ALVZ01000125 24,190 24
ALVZ01000124 24,128 23
ALVZ01000123 23,892 20
ALVZ01000122 23,652 23
ALVZ01000121 23,314 19
ALVZ01000120 23,094 25
ALVZ01000119 22,557 19
ALVZ01000118 21,937 15
ALVZ01000117 21,550 19
ALVZ01000116 21,426 20
ALVZ01000115 21,229 18
ALVZ01000114 20,851 29
ALVZ01000113 20,256 18
ALVZ01000112 20,113 14
ALVZ01000111 19,942 17
ALVZ01000110 19,838 28
ALVZ01000109 19,392 15
ALVZ01000131 19,296 20
ALVZ01000108 19,174 19
ALVZ01000107 19,013 23
ALVZ01000106 18,890 16
ALVZ01000105 18,858 19
ALVZ01000104 18,854 20
ALVZ01000103 18,682 18
ALVZ01000102 18,353 15
ALVZ01000101 18,234 15
ALVZ01000100 18,144 11
ALVZ01000099 18,103 25
ALVZ01000145 18,055 17
ALVZ01000098 17,824 25
ALVZ01000097 17,769 16
ALVZ01000096 17,768 16
ALVZ01000095 17,551 17
ALVZ01000094 17,491 12
ALVZ01000093 17,237 21
ALVZ01000092 16,924 21
ALVZ01000091 16,905 17
ALVZ01000088 16,621 15
ALVZ01000087 16,468 16
ALVZ01000086 16,449 16
ALVZ01000083 15,613 15
ALVZ01000082 15,504 11
ALVZ01000229 15,330 15
ALVZ01000081 14,283 14
ALVZ01000080 14,269 15
ALVZ01000090 14,265 12
ALVZ01000079 14,189 11
ALVZ01000078 13,777 17
ALVZ01000077 13,638 18
ALVZ01000076 13,623 15
ALVZ01000075 13,595 12
ALVZ01000129 13,394 13
ALVZ01000074 13,255 14
ALVZ01000073 13,252 20
ALVZ01000071 13,002 10
ALVZ01000072 12,998 13
ALVZ01000070 12,976 15
ALVZ01000069 12,871 14
ALVZ01000068 12,786 15
ALVZ01000067 12,770 13
ALVZ01000065 12,643 13
ALVZ01000066 12,610 11
ALVZ01000188 12,281 8
ALVZ01000064 11,867 10
ALVZ01000063 11,794 10
ALVZ01000062 11,645 8
ALVZ01000061 11,447 11
ALVZ01000060 11,304 7
ALVZ01000059 11,269 13
ALVZ01000058 11,027 11
ALVZ01000084 10,932 10
ALVZ01000130 10,878 12
ALVZ01000057 10,618 11
ALVZ01000056 10,430 10
ALVZ01000055 10,271 8
ALVZ01000054 10,166 9
ALVZ01000053 10,103 8
ALVZ01000052 10,083 10
ALVZ01000051 9,843 6
ALVZ01000050 9,814 15
ALVZ01000144 9,226 7
ALVZ01000049 9,025 10
ALVZ01000048 8,852 12
ALVZ01000047 8,809 10
ALVZ01000046 8,657 7
ALVZ01000045 8,543 7
ALVZ01000044 8,425 12
ALVZ01000043 7,971 6
ALVZ01000042 7,877 7
ALVZ01000041 7,776 9
ALVZ01000040 7,756 7
ALVZ01000039 7,583 10
ALVZ01000038 7,345 5
ALVZ01000037 6,279 7
ALVZ01000170 5,935 6
ALVZ01000036 5,922 4
ALVZ01000132 5,551 5
ALVZ01000035 5,409 5
ALVZ01000034 5,397 8
ALVZ01000033 5,326 5
ALVZ01000031 5,123 4
ALVZ01000032 5,122 6
ALVZ01000030 5,060 4
ALVZ01000029 4,859 2
ALVZ01000085 4,804 3
ALVZ01000028 4,746 4
ALVZ01000027 4,703 3
ALVZ01000026 4,460 7
ALVZ01000025 4,442 5
ALVZ01000143 4,416 9
ALVZ01000024 3,970 4
ALVZ01000023 3,845 3
ALVZ01000022 3,596 4
ALVZ01000021 3,432 2
ALVZ01000020 3,158 1
ALVZ01000019 3,123 1
ALVZ01000018 3,079 5
ALVZ01000017 2,687 5
ALVZ01000016 2,635 3
ALVZ01000015 2,515 1
ALVZ01000014 2,395 5
ALVZ01000013 2,373 4
ALVZ01000012 2,270 3
ALVZ01000011 2,120 2
ALVZ01000089 2,074 2
ALVZ01000010 1,989 2
ALVZ01000009 1,907 4
ALVZ01000008 1,838 2
ALVZ01000007 1,831 2
ALVZ01000006 1,715 1
ALVZ01000005 1,706 1
ALVZ01000004 1,628 2
ALVZ01000003 1,586 1
ALVZ01000002 1,553 2
ALVZ01000001 1,489 1
ALVZ01000209 1,467 1
ALVZ01000208 1,438 2
ALVZ01000207 1,396 4
ALVZ01000206 1,211 1
ALVZ01000205 1,201 1
ALVZ01000204 1,171 2
ALVZ01000203 1,107 1
ALVZ01000202 1,014 1
ALVZ01000201 958 1
Total 5,929,641 5,419
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000332055.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000332055.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000332055.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000332055.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000332055.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000332055.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000332055.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000332055.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000332055.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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