cyanobase » Gloeocapsa sp. PCC 73106

Gloeocapsa sp. PCC 73106

Summary

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Data source name GCA_000332035.1
Full name Gloeocapsa sp. PCC 73106 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.

Genome Information

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Chromosomes
Name Size (bp) Genes
ALVY01000228 118,110 107
ALVY01000227 102,152 93
ALVY01000226 99,661 107
ALVY01000225 86,412 97
ALVY01000224 83,896 82
ALVY01000223 82,974 93
ALVY01000222 76,449 79
ALVY01000221 70,075 64
ALVY01000220 66,540 61
ALVY01000219 61,481 61
ALVY01000218 61,074 52
ALVY01000217 57,991 53
ALVY01000216 55,699 59
ALVY01000215 55,441 57
ALVY01000214 54,632 59
ALVY01000213 54,610 34
ALVY01000212 53,865 55
ALVY01000211 51,545 56
ALVY01000210 50,600 49
ALVY01000209 50,103 51
ALVY01000208 48,253 54
ALVY01000207 45,494 12
ALVY01000206 43,262 51
ALVY01000205 43,183 46
ALVY01000204 42,586 42
ALVY01000200 42,397 43
ALVY01000199 41,983 43
ALVY01000198 41,645 37
ALVY01000197 40,939 33
ALVY01000196 40,412 45
ALVY01000195 40,208 53
ALVY01000194 39,827 40
ALVY01000193 38,214 39
ALVY01000192 37,143 35
ALVY01000191 35,959 36
ALVY01000190 34,977 41
ALVY01000189 34,764 37
ALVY01000188 33,173 35
ALVY01000187 32,922 32
ALVY01000186 32,432 35
ALVY01000185 32,311 31
ALVY01000184 31,944 33
ALVY01000183 31,903 41
ALVY01000182 31,304 37
ALVY01000179 28,405 22
ALVY01000178 28,142 25
ALVY01000177 27,713 37
ALVY01000176 27,490 28
ALVY01000173 26,558 25
ALVY01000172 26,343 30
ALVY01000171 26,268 28
ALVY01000170 25,076 28
ALVY01000169 24,702 25
ALVY01000168 24,554 21
ALVY01000167 24,144 39
ALVY01000166 23,885 22
ALVY01000165 23,010 30
ALVY01000181 22,915 28
ALVY01000164 22,811 17
ALVY01000163 22,429 23
ALVY01000162 21,989 25
ALVY01000161 21,885 21
ALVY01000160 21,560 26
ALVY01000159 20,006 20
ALVY01000158 19,943 20
ALVY01000157 19,269 21
ALVY01000156 18,930 16
ALVY01000155 18,295 23
ALVY01000154 18,002 18
ALVY01000153 17,720 16
ALVY01000152 17,506 19
ALVY01000151 17,382 19
ALVY01000150 17,352 18
ALVY01000149 17,232 13
ALVY01000148 17,118 20
ALVY01000147 16,789 22
ALVY01000144 16,425 18
ALVY01000143 16,200 16
ALVY01000142 15,959 16
ALVY01000141 15,725 20
ALVY01000139 15,647 18
ALVY01000140 15,595 13
ALVY01000138 15,559 20
ALVY01000137 15,341 15
ALVY01000145 15,331 15
ALVY01000136 15,248 15
ALVY01000135 14,978 19
ALVY01000175 14,908 15
ALVY01000134 13,855 13
ALVY01000133 13,423 19
ALVY01000132 12,828 13
ALVY01000131 12,653 17
ALVY01000130 12,610 19
ALVY01000129 12,545 11
ALVY01000128 12,493 13
ALVY01000127 12,380 4
ALVY01000125 12,341 10
ALVY01000124 12,327 16
ALVY01000123 12,321 10
ALVY01000126 12,307 15
ALVY01000122 12,284 12
ALVY01000121 12,263 10
ALVY01000174 12,087 14
ALVY01000120 11,690 14
ALVY01000119 11,553 12
ALVY01000118 11,522 15
ALVY01000117 11,507 12
ALVY01000116 11,452 15
ALVY01000115 11,347 15
ALVY01000114 10,805 11
ALVY01000113 10,544 14
ALVY01000112 10,541 20
ALVY01000111 10,453 7
ALVY01000110 10,448 13
ALVY01000109 10,432 9
ALVY01000108 10,022 15
ALVY01000107 9,643 9
ALVY01000106 9,614 8
ALVY01000105 9,571 9
ALVY01000104 9,406 11
ALVY01000103 9,238 7
ALVY01000102 9,038 12
ALVY01000101 8,974 10
ALVY01000100 8,935 7
ALVY01000099 8,918 7
ALVY01000098 8,813 13
ALVY01000097 8,621 7
ALVY01000096 8,382 9
ALVY01000095 8,336 7
ALVY01000094 8,326 9
ALVY01000093 8,176 8
ALVY01000092 7,858 7
ALVY01000091 7,752 11
ALVY01000090 7,706 9
ALVY01000089 7,665 7
ALVY01000088 7,604 8
ALVY01000087 7,502 9
ALVY01000086 7,306 7
ALVY01000180 7,076 9
ALVY01000085 6,965 7
ALVY01000084 6,855 10
ALVY01000083 6,716 10
ALVY01000082 6,681 8
ALVY01000081 6,676 8
ALVY01000080 6,350 5
ALVY01000079 6,320 2
ALVY01000078 6,069 3
ALVY01000077 5,983 2
ALVY01000076 5,959 8
ALVY01000075 5,837 6
ALVY01000074 5,599 11
ALVY01000073 5,558 4
ALVY01000072 5,483 3
ALVY01000071 5,445 4
ALVY01000070 5,410 5
ALVY01000069 5,321 8
ALVY01000068 5,307 10
ALVY01000067 5,262 6
ALVY01000066 5,244 6
ALVY01000065 5,222 4
ALVY01000064 5,031 5
ALVY01000063 5,010 7
ALVY01000062 4,989 8
ALVY01000061 4,960 9
ALVY01000060 4,926 7
ALVY01000059 4,915 8
ALVY01000058 4,861 5
ALVY01000057 4,586 6
ALVY01000056 4,548 4
ALVY01000055 4,344 4
ALVY01000054 4,280 3
ALVY01000053 4,145 5
ALVY01000052 3,944 4
ALVY01000051 3,929 4
ALVY01000050 3,554 4
ALVY01000048 3,428 1
ALVY01000049 3,394 1
ALVY01000047 3,372 4
ALVY01000046 3,324 5
ALVY01000045 3,305 6
ALVY01000044 3,199 2
ALVY01000043 2,997 1
ALVY01000042 2,955 4
ALVY01000041 2,840 1
ALVY01000040 2,785 3
ALVY01000038 2,780 6
ALVY01000037 2,730 3
ALVY01000039 2,728 3
ALVY01000036 2,614 1
ALVY01000035 2,543 5
ALVY01000034 2,426 3
ALVY01000033 2,423 2
ALVY01000032 2,331 3
ALVY01000031 2,297 6
ALVY01000030 2,296 1
ALVY01000029 2,242 3
ALVY01000028 2,099 5
ALVY01000027 2,005 3
ALVY01000026 1,972 2
ALVY01000025 1,886 3
ALVY01000024 1,803 1
ALVY01000023 1,738 3
ALVY01000022 1,713 1
ALVY01000021 1,667 3
ALVY01000020 1,644 1
ALVY01000019 1,628 1
ALVY01000017 1,488 1
ALVY01000016 1,465 2
ALVY01000018 1,463 2
ALVY01000014 1,426 2
ALVY01000013 1,408 1
ALVY01000015 1,380 2
ALVY01000012 1,336 2
ALVY01000011 1,279 1
ALVY01000010 1,261 1
ALVY01000008 1,253 2
ALVY01000009 1,249 2
ALVY01000007 1,205 2
ALVY01000005 1,186 3
ALVY01000006 1,169 2
ALVY01000004 1,168 1
ALVY01000003 1,164 3
ALVY01000146 1,137 2
ALVY01000002 1,126 2
ALVY01000001 1,048 1
ALVY01000203 1,045 1
ALVY01000202 1,033 1
ALVY01000201 1,000 1
Total 4,025,114 4,150
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000332035.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000332035.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000332035.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000332035.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000332035.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000332035.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000332035.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000332035.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000332035.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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